1 Response_reg#1
2-114 aa · 113 aa · 50.4% of protein
Raw token
Response_reg:2:3.18e-34:114:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2D84_RS01945
Response regulator OmpR family
Dorea longicatena · GCF_015552885
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015552885#I2D84_RS01945Stable P2CS identifier used across views.
GenomeGCF_015552885Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 224 aa (83.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-222 aa · 74 aa · 33.0% of protein
Raw token
Trans_reg_C:149:6.72e-35:222:77:77- Raw architecture: Response_reg:2:3.18e-34:114:113:111#Trans_reg_C:149:6.72e-35:222:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015552885::NZ_JADNFQ010000005.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span41483-43484Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015552885::NZ_JADNFQ010000005.1::G00029Context members
I2D84_RS01940I2D84_RS01945
Partner locus tags
I2D84_RS01940I2D84_RS01945
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006428416.1Primary protein accession used for annex mappings.
UniProt accessionA6BDF2Primary UniProt accession resolved in the annex database.
UniProt IDA6BDF2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2D84_RS01945Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNFQ010000005.1Sequence record reported by the local genomic context database.
Genomic interval42 810-43 484 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span41 483-43 484 ntGCF_015552885::NZ_JADNFQ010000005.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015552885::NZ_JADNFQ010000005.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNFQ010000005.1All displayed genes belong to this local TCS context.
Neighborhood span41 483-43 484 nt2 002 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 483 nt43 484 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2D84_RS01940GCF_015552885#I2D84_RS01940
HKClassic
41 483-42 793 nt · Reverse (-)
I2D84_RS01945GCF_015552885#I2D84_RS01945
RROmpRCurrent focus
42 810-43 484 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154065#DORLON_RS11160Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1529054
Simplified PFAM architecture for RROC_1529054
PFAM domain coverage: 187 / 224 aa (83.5%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[2-114] | Trans_reg_C[149-222]
- Domain count: 2
- Matched identifier: RROC_1529054
- Positioned domains: Response_reg 2-114 ; Response_reg 2-114 ; Trans_reg_C 149-222 ; Trans_reg_C 149-222
Cluster members and taxonomy
Representative gene: GCF_000154065#DORLON_RS11160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_015552885
AssemblyASM1555288v1 · Scaffoldhaploid
Genome composition3 192 614 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 76 · HK 35 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key