1 HisKA#1
142-208 aa · 67 aa · 18.4% of protein
Raw token
HisKA:142:0.00000000000694:208:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2D84_RS01835
Histidine kinase, Classic
Dorea longicatena · GCF_015552885
ClassHKTypeClassicLength364 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015552885#I2D84_RS01835Stable P2CS identifier used across views.
GenomeGCF_015552885Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length364 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 364 aa (48.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa364 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
253-360 aa · 108 aa · 29.7% of protein
Raw token
HATPase_c:253:7.55e-23:360:109:109- Raw architecture: HisKA:142:0.00000000000694:208:67:64#HATPase_c:253:7.55e-23:360:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015552885::NZ_JADNFQ010000005.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span14668-16520Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015552885::NZ_JADNFQ010000005.1::G00028Context members
I2D84_RS01835I2D84_RS01840
Partner locus tags
I2D84_RS01835I2D84_RS01840
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195389273.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2D84_RS01835Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNFQ010000005.1Sequence record reported by the local genomic context database.
Genomic interval14 668-15 804 nt1 137 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span14 668-16 520 ntGCF_015552885::NZ_JADNFQ010000005.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015552885::NZ_JADNFQ010000005.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNFQ010000005.1All displayed genes belong to this local TCS context.
Neighborhood span14 668-16 520 nt1 853 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 668 nt16 520 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2D84_RS01835GCF_015552885#I2D84_RS01835
HKClassicCurrent focus
14 668-15 804 nt · Forward (+)
I2D84_RS01840GCF_015552885#I2D84_RS01840
RROmpR
15 807-16 520 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015552885#I2D84_RS01835The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2727018
Simplified PFAM architecture for HKOC_2727018
PFAM domain coverage: 281 / 364 aa (77.2%)
1 aa364 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[22-128] | HisKA[142-207] | HATPase_c[254-361]
- Domain count: 3
- Matched identifier: HKOC_2727018
- Positioned domains: DUF4118 22-128 ; HisKA 142-207 ; HATPase_c 254-361
Cluster members and taxonomy
Representative gene: GCF_015552885#I2D84_RS01835
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_015552885
AssemblyASM1555288v1 · Scaffoldhaploid
Genome composition3 192 614 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 76 · HK 35 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key