1 HAMP#1
81-145 aa · 65 aa · 17.8% of protein
Raw token
HAMP:81:0.000000663:145:66:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2D84_RS00915
Histidine kinase, Classic
Dorea longicatena · GCF_015552885
ClassHKTypeClassicLength366 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015552885#I2D84_RS00915Stable P2CS identifier used across views.
GenomeGCF_015552885Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length366 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage224 / 366 aa (61.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa366 aa
Domain-by-domain annotation3 items
2 HisKA#2
158-219 aa · 62 aa · 16.9% of protein
Raw token
HisKA:158:0.0000000145:219:63:643 HATPase_c#3
269-365 aa · 97 aa · 26.5% of protein
Raw token
HATPase_c:269:3.16e-16:365:99:109- Raw architecture: HAMP:81:0.000000663:145:66:69#HisKA:158:0.0000000145:219:63:64#HATPase_c:269:3.16e-16:365:99:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015552885::NZ_JADNFQ010000002.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span84002-85767Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015552885::NZ_JADNFQ010000002.1::G00019Context members
I2D84_RS00910I2D84_RS00915
Partner locus tags
I2D84_RS00910I2D84_RS00915
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330609326.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2D84_RS00915Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNFQ010000002.1Sequence record reported by the local genomic context database.
Genomic interval84 667-85 767 nt1 101 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span84 002-85 767 ntGCF_015552885::NZ_JADNFQ010000002.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015552885::NZ_JADNFQ010000002.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNFQ010000002.1All displayed genes belong to this local TCS context.
Neighborhood span84 002-85 767 nt1 766 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
84 002 nt85 767 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2D84_RS00910GCF_015552885#I2D84_RS00910
RROmpR
84 002-84 679 nt · Forward (+)
I2D84_RS00915GCF_015552885#I2D84_RS00915
HKClassicCurrent focus
84 667-85 767 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015552885#I2D84_RS00915The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2714739
Simplified PFAM architecture for HKOC_2714739
PFAM domain coverage: 203 / 366 aa (55.5%)
1 aa366 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[101-146] | HisKA[159-219] | HATPase_c[268-363]
- Domain count: 3
- Matched identifier: HKOC_2714739
- Positioned domains: HAMP 101-146 ; HisKA 159-219 ; HATPase_c 268-363
Cluster members and taxonomy
Representative gene: GCF_015552885#I2D84_RS00915
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_015552885
AssemblyASM1555288v1 · Scaffoldhaploid
Genome composition3 192 614 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 76 · HK 35 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key