1 HisKA#1
22-72 aa · 51 aa · 22.3% of protein
Raw token
HisKA:22:0.00000275:72:51:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2D95_RS12940
Histidine kinase, Classic
Ruminococcus sp. 1001136B_160425_D2 · GCF_015552475
ClassHKTypeClassicLength229 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015552475#I2D95_RS12940Stable P2CS identifier used across views.
GenomeGCF_015552475Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 229 aa (68.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
121-226 aa · 106 aa · 46.3% of protein
Raw token
HATPase_c:121:3.78e-30:226:109:109- Raw architecture: HisKA:22:0.00000275:72:51:64#HATPase_c:121:3.78e-30:226:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015552475::NZ_JADNET010000021.1::G00020
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span52548-53237Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015552475::NZ_JADNET010000021.1::G00020Context members
I2D95_RS12940
Partner locus tags
I2D95_RS12940
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173770896.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2D95_RS12940Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNET010000021.1Sequence record reported by the local genomic context database.
Genomic interval52 548-53 237 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span52 548-53 237 ntGCF_015552475::NZ_JADNET010000021.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015552475::NZ_JADNET010000021.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNET010000021.1All displayed genes belong to this local TCS context.
Neighborhood span52 548-53 237 nt690 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
52 548 nt53 237 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2D95_RS12940GCF_015552475#I2D95_RS12940
HKClassicCurrent focus
52 548-53 237 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302375#G5A01_RS05650Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2926359
Simplified PFAM architecture for HKOC_2926359
PFAM domain coverage: 105 / 229 aa (45.9%)
1 aa229 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[121-225]
- Domain count: 1
- Matched identifier: HKOC_2926359
- Positioned domains: HATPase_c 121-225
Cluster members and taxonomy
Representative gene: GCF_013302375#G5A01_RS05650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 121 · GCF_015552475
AssemblyASM1555247v1 · Scaffoldhaploid
Genome composition4 161 664 bp · 43,0% GCRuminococcus sp. 1001136B_160425_D2
Signal transduction countsGenes 123 · HK 62 · RR 60CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key