1 HisKA_3#1
129-193 aa · 65 aa · 20.6% of protein
Raw token
HisKA_3:129:2.42e-16:193:67:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2D95_RS09170
Histidine kinase, Classic
Ruminococcus sp. 1001136B_160425_D2 · GCF_015552475
ClassHKTypeClassicLength315 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015552475#I2D95_RS09170Stable P2CS identifier used across views.
GenomeGCF_015552475Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length315 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage145 / 315 aa (46.0%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa315 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
233-312 aa · 80 aa · 25.4% of protein
Raw token
HATPase_c:233:0.000000000996:312:98:109- Raw architecture: HisKA_3:129:2.42e-16:193:67:68#HATPase_c:233:0.000000000996:312:98:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015552475::NZ_JADNET010000013.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4581-6246Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015552475::NZ_JADNET010000013.1::G00004Context members
I2D95_RS09170I2D95_RS09175
Partner locus tags
I2D95_RS09170I2D95_RS09175
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_237925947.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2D95_RS09170Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNET010000013.1Sequence record reported by the local genomic context database.
Genomic interval4 581-5 528 nt948 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 581-6 246 ntGCF_015552475::NZ_JADNET010000013.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015552475::NZ_JADNET010000013.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNET010000013.1All displayed genes belong to this local TCS context.
Neighborhood span4 581-6 246 nt1 666 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 581 nt6 246 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2D95_RS09170GCF_015552475#I2D95_RS09170
HKClassicCurrent focus
4 581-5 528 nt · Forward (+)
I2D95_RS09175GCF_015552475#I2D95_RS09175
RRNarL
5 626-6 246 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300845#G5B24_RS17790Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2873671
Simplified PFAM architecture for HKOC_2873671
PFAM domain coverage: 64 / 315 aa (20.3%)
1 aa315 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[129-192]
- Domain count: 1
- Matched identifier: HKOC_2873671
- Positioned domains: HisKA_3 129-192
Cluster members and taxonomy
Representative gene: GCF_013300845#G5B24_RS17790
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 121 · GCF_015552475
AssemblyASM1555247v1 · Scaffoldhaploid
Genome composition4 161 664 bp · 43,0% GCRuminococcus sp. 1001136B_160425_D2
Signal transduction countsGenes 123 · HK 62 · RR 60CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key