1 PAS_3#1
154-210 aa · 57 aa · 6.0% of protein
Raw token
PAS_3:154:0.000000000317:210:60:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2D95_RS05100
Histidine kinase, Hybrid
Ruminococcus sp. 1001136B_160425_D2 · GCF_015552475
ClassHKTypeHybridLength949 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015552475#I2D95_RS05100Stable P2CS identifier used across views.
GenomeGCF_015552475Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
PAS_3GGDEFHisKAHATPase_cResponse_reg
Protein length949 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage484 / 949 aa (51.0%)Merged over positioned domains only.
Domain description1 PAS_3,1 GGDEF,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa949 aa
Domain-by-domain annotation5 items
2 GGDEF#2
257-380 aa · 124 aa · 13.1% of protein
Raw token
GGDEF:257:0.00000738:380:134:1603 HisKA#3
577-643 aa · 67 aa · 7.1% of protein
Raw token
HisKA:577:4.23e-18:643:67:644 HATPase_c#4
689-806 aa · 118 aa · 12.4% of protein
Raw token
HATPase_c:689:4.48e-30:806:118:1095 Response_reg#5
828-945 aa · 118 aa · 12.4% of protein
Raw token
Response_reg:828:3.36e-30:945:118:111- Raw architecture: PAS_3:154:0.000000000317:210:60:89#GGDEF:257:0.00000738:380:134:160#HisKA:577:4.23e-18:643:67:64#HATPase_c:689:4.48e-30:806:118:109#Response_reg:828:3.36e-30:945:118:111
- Domain description: 1 PAS_3,1 GGDEF,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015552475::NZ_JADNET010000006.1::G00064
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span63719-66568Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015552475::NZ_JADNET010000006.1::G00064Context members
I2D95_RS05100
Partner locus tags
I2D95_RS05100
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195391809.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2D95_RS05100Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNET010000006.1Sequence record reported by the local genomic context database.
Genomic interval63 719-66 568 nt2 850 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span63 719-66 568 ntGCF_015552475::NZ_JADNET010000006.1::G00064
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015552475::NZ_JADNET010000006.1::G00064Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNET010000006.1All displayed genes belong to this local TCS context.
Neighborhood span63 719-66 568 nt2 850 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
63 719 nt66 568 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2D95_RS05100GCF_015552475#I2D95_RS05100
HKHybridCurrent focus
63 719-66 568 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015552475#I2D95_RS05100The current gene is the representative for this cluster.
PFAM architecturePAS_3 + GGDEF + HisKA + HATPase_c + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0329071
Simplified PFAM architecture for HKOC_0329071
PFAM domain coverage: 486 / 949 aa (51.2%)
1 aa949 aa
PAS_3GGDEFHisKAHATPase_cResponse_reg
- Simplified architecture: PAS_3 + GGDEF + HisKA + HATPase_c + Response_reg
- Raw architecture: PAS_3[154-211] | GGDEF[252-379] | HisKA[577-643] | HATPase_c[690-805] | Response_reg[828-944]
- Domain count: 5
- Matched identifier: HKOC_0329071
- Positioned domains: PAS_3 154-211 ; GGDEF 252-379 ; HisKA 577-643 ; HATPase_c 690-805 ; Response_reg 828-944
Cluster members and taxonomy
Representative gene: GCF_015552475#I2D95_RS05100
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 121 · GCF_015552475
AssemblyASM1555247v1 · Scaffoldhaploid
Genome composition4 161 664 bp · 43,0% GCRuminococcus sp. 1001136B_160425_D2
Signal transduction countsGenes 123 · HK 62 · RR 60CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key