1 His_kinase#1
123-202 aa · 80 aa · 22.9% of protein
Raw token
His_kinase:123:4.58e-34:202:80:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2D95_RS04710
Histidine kinase, Classic
Ruminococcus sp. 1001136B_160425_D2 · GCF_015552475
ClassHKTypeClassicLength349 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015552475#I2D95_RS04710Stable P2CS identifier used across views.
GenomeGCF_015552475Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length349 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage189 / 349 aa (54.2%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa349 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
226-334 aa · 109 aa · 31.2% of protein
Raw token
HATPase_c:226:0.000000000000821:334:109:109- Raw architecture: His_kinase:123:4.58e-34:202:80:80#HATPase_c:226:0.000000000000821:334:109:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015552475::NZ_JADNET010000005.1::G00059
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span140299-143002Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015552475::NZ_JADNET010000005.1::G00059Context members
I2D95_RS04710I2D95_RS04715
Partner locus tags
I2D95_RS04710I2D95_RS04715
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_148461526.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX2H9Q0Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX2H9Q0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2D95_RS04710Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNET010000005.1Sequence record reported by the local genomic context database.
Genomic interval140 299-141 348 nt1 050 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span140 299-143 002 ntGCF_015552475::NZ_JADNET010000005.1::G00059
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015552475::NZ_JADNET010000005.1::G00059Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNET010000005.1All displayed genes belong to this local TCS context.
Neighborhood span140 299-143 002 nt2 704 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
140 299 nt143 002 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2D95_RS04710GCF_015552475#I2D95_RS04710
HKClassicCurrent focus
140 299-141 348 nt · Reverse (-)
I2D95_RS04715GCF_015552475#I2D95_RS04715
RRunclassified
141 356-143 002 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015561345#I2041_RS11905Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2781454
Simplified PFAM architecture for HKOC_2781454
PFAM domain coverage: 190 / 354 aa (53.7%)
1 aa354 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[128-207] | HATPase_c[231-340]
- Domain count: 2
- Matched identifier: HKOC_2781454
- Positioned domains: His_kinase 128-207 ; HATPase_c 231-340
Cluster members and taxonomy
Representative gene: GCF_015561345#I2041_RS11905
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 121 · GCF_015552475
AssemblyASM1555247v1 · Scaffoldhaploid
Genome composition4 161 664 bp · 43,0% GCRuminococcus sp. 1001136B_160425_D2
Signal transduction countsGenes 123 · HK 62 · RR 60CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key