1 HisKA#1
92-153 aa · 62 aa · 20.1% of protein
Raw token
HisKA:92:0.0000000000373:153:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2D95_RS02160
Histidine kinase, Classic
Ruminococcus sp. 1001136B_160425_D2 · GCF_015552475
ClassHKTypeClassicLength309 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015552475#I2D95_RS02160Stable P2CS identifier used across views.
GenomeGCF_015552475Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length309 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 309 aa (54.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa309 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
199-304 aa · 106 aa · 34.3% of protein
Raw token
HATPase_c:199:9.51e-27:304:106:109- Raw architecture: HisKA:92:0.0000000000373:153:62:64#HATPase_c:199:9.51e-27:304:106:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015552475::NZ_JADNET010000002.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span148784-150369Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015552475::NZ_JADNET010000002.1::G00034Context members
I2D95_RS02160I2D95_RS02165
Partner locus tags
I2D95_RS02160I2D95_RS02165
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173719587.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2D95_RS02160Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNET010000002.1Sequence record reported by the local genomic context database.
Genomic interval148 784-149 713 nt930 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span148 784-150 369 ntGCF_015552475::NZ_JADNET010000002.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015552475::NZ_JADNET010000002.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNET010000002.1All displayed genes belong to this local TCS context.
Neighborhood span148 784-150 369 nt1 586 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
148 784 nt150 369 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2D95_RS02160GCF_015552475#I2D95_RS02160
HKClassicCurrent focus
148 784-149 713 nt · Reverse (-)
I2D95_RS02165GCF_015552475#I2D95_RS02165
RROmpR
149 701-150 369 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300845#G5B24_RS18140Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2879528
Simplified PFAM architecture for HKOC_2879528
PFAM domain coverage: 170 / 309 aa (55.0%)
1 aa309 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[92-153] | HATPase_c[199-306]
- Domain count: 2
- Matched identifier: HKOC_2879528
- Positioned domains: HisKA 92-153 ; HATPase_c 199-306
Cluster members and taxonomy
Representative gene: GCF_013300845#G5B24_RS18140
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 121 · GCF_015552475
AssemblyASM1555247v1 · Scaffoldhaploid
Genome composition4 161 664 bp · 43,0% GCRuminococcus sp. 1001136B_160425_D2
Signal transduction countsGenes 123 · HK 62 · RR 60CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key