1 Response_reg#1
5-114 aa · 110 aa · 46.0% of protein
Raw token
Response_reg:5:2.26e-36:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2D95_RS02130
Response regulator OmpR family
Ruminococcus sp. 1001136B_160425_D2 · GCF_015552475
ClassRRTypeOmpRLength239 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015552475#I2D95_RS02130Stable P2CS identifier used across views.
GenomeGCF_015552475Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 239 aa (78.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
161-237 aa · 77 aa · 32.2% of protein
Raw token
Trans_reg_C:161:5.35e-30:237:77:77- Raw architecture: Response_reg:5:2.26e-36:114:111:111#Trans_reg_C:161:5.35e-30:237:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015552475::NZ_JADNET010000002.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span140717-142553Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015552475::NZ_JADNET010000002.1::G00033Context members
I2D95_RS02125I2D95_RS02130
Partner locus tags
I2D95_RS02125I2D95_RS02130
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118582214.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2D95_RS02130Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNET010000002.1Sequence record reported by the local genomic context database.
Genomic interval141 834-142 553 nt720 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span140 717-142 553 ntGCF_015552475::NZ_JADNET010000002.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015552475::NZ_JADNET010000002.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNET010000002.1All displayed genes belong to this local TCS context.
Neighborhood span140 717-142 553 nt1 837 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
140 717 nt142 553 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2D95_RS02125GCF_015552475#I2D95_RS02125
HKClassic
140 717-141 844 nt · Reverse (-)
I2D95_RS02130GCF_015552475#I2D95_RS02130
RROmpRCurrent focus
141 834-142 553 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480145#DW904_RS15100Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0913041
Simplified PFAM architecture for RROC_0913041
PFAM domain coverage: 186 / 239 aa (77.8%)
1 aa239 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[161-236]
- Domain count: 2
- Matched identifier: RROC_0913041
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 161-236 ; Trans_reg_C 161-236
Cluster members and taxonomy
Representative gene: GCF_003480145#DW904_RS15100
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 121 · GCF_015552475
AssemblyASM1555247v1 · Scaffoldhaploid
Genome composition4 161 664 bp · 43,0% GCRuminococcus sp. 1001136B_160425_D2
Signal transduction countsGenes 123 · HK 62 · RR 60CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key