1 Response_reg#1
4-117 aa · 114 aa · 45.4% of protein
Raw token
Response_reg:4:3.35e-25:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2D95_RS02040
Response regulator, unclassified
Ruminococcus sp. 1001136B_160425_D2 · GCF_015552475
ClassRRTypeunclassifiedLength251 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015552475#I2D95_RS02040Stable P2CS identifier used across views.
GenomeGCF_015552475Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length251 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage187 / 251 aa (74.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa251 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
152-186 aa · 35 aa · 13.9% of protein
Raw token
HTH_AraC:152:0.0000000269:186:35:423 HTH_AraC#3
206-243 aa · 38 aa · 15.1% of protein
Raw token
HTH_AraC:206:0.000000285:243:38:42- Raw architecture: Response_reg:4:3.35e-25:117:114:111#HTH_AraC:152:0.0000000269:186:35:42#HTH_AraC:206:0.000000285:243:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015552475::NZ_JADNET010000002.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span120680-123152Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015552475::NZ_JADNET010000002.1::G00031Context members
I2D95_RS02040I2D95_RS02045
Partner locus tags
I2D95_RS02040I2D95_RS02045
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195391682.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2D95_RS02040Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNET010000002.1Sequence record reported by the local genomic context database.
Genomic interval120 680-121 435 nt756 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span120 680-123 152 ntGCF_015552475::NZ_JADNET010000002.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015552475::NZ_JADNET010000002.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNET010000002.1All displayed genes belong to this local TCS context.
Neighborhood span120 680-123 152 nt2 473 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
120 680 nt123 152 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2D95_RS02040GCF_015552475#I2D95_RS02040
RRunclassifiedCurrent focus
120 680-121 435 nt · Reverse (-)
I2D95_RS02045GCF_015552475#I2D95_RS02045
HKClassic
121 410-123 152 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015552475#I2D95_RS02040The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0715729
Simplified PFAM architecture for RROC_0715729
PFAM domain coverage: 193 / 251 aa (76.9%)
1 aa251 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[165-244]
- Domain count: 2
- Matched identifier: RROC_0715729
- Positioned domains: Response_reg 4-116 ; HTH_18 165-244
Cluster members and taxonomy
Representative gene: GCF_015552475#I2D95_RS02040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 121 · GCF_015552475
AssemblyASM1555247v1 · Scaffoldhaploid
Genome composition4 161 664 bp · 43,0% GCRuminococcus sp. 1001136B_160425_D2
Signal transduction countsGenes 123 · HK 62 · RR 60CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key