1 HAMP#1
168-237 aa · 70 aa · 14.9% of protein
Raw token
HAMP:168:0.00000000000000123:237:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2D13_RS10945
Histidine kinase, Classic
Clostridium paraputrificum · GCF_015551495
ClassHKTypeClassicLength470 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015551495#I2D13_RS10945Stable P2CS identifier used across views.
GenomeGCF_015551495Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length470 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 470 aa (51.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa470 aa
Domain-by-domain annotation3 items
2 HisKA#2
242-307 aa · 66 aa · 14.0% of protein
Raw token
HisKA:242:6.64e-17:307:66:643 HATPase_c#3
354-459 aa · 106 aa · 22.6% of protein
Raw token
HATPase_c:354:1.06e-31:459:107:109- Raw architecture: HAMP:168:0.00000000000000123:237:70:69#HisKA:242:6.64e-17:307:66:64#HATPase_c:354:1.06e-31:459:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015551495::NZ_JADNCW010000007.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span208872-210980Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015551495::NZ_JADNCW010000007.1::G00033Context members
I2D13_RS10945I2D13_RS10950
Partner locus tags
I2D13_RS10945I2D13_RS10950
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_099314075.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2D13_RS10945Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNCW010000007.1Sequence record reported by the local genomic context database.
Genomic interval208 872-210 284 nt1 413 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span208 872-210 980 ntGCF_015551495::NZ_JADNCW010000007.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015551495::NZ_JADNCW010000007.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNCW010000007.1All displayed genes belong to this local TCS context.
Neighborhood span208 872-210 980 nt2 109 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
208 872 nt210 980 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2D13_RS10945GCF_015551495#I2D13_RS10945
HKClassicCurrent focus
208 872-210 284 nt · Reverse (-)
I2D13_RS10950GCF_015551495#I2D13_RS10950
RROmpR
210 288-210 980 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003611795#D7V67_RS16405Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1719448
Simplified PFAM architecture for HKOC_1719448
PFAM domain coverage: 223 / 470 aa (47.4%)
1 aa470 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[186-236] | HisKA[242-307] | HATPase_c[354-459]
- Domain count: 3
- Matched identifier: HKOC_1719448
- Positioned domains: HAMP 186-236 ; HisKA 242-307 ; HATPase_c 354-459
Cluster members and taxonomy
Representative gene: GCF_003611795#D7V67_RS16405
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_015551495
AssemblyASM1555149v1 · Scaffoldhaploid
Genome composition3 748 962 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 72 · HK 38 · RR 32CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key