1 Response_reg#1
3-112 aa · 110 aa · 50.5% of protein
Raw token
Response_reg:3:2.58e-30:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2B30_RS01170
Response regulator OmpR family
Clostridium paraputrificum · GCF_015549545
ClassRRTypeOmpRLength218 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015549545#I2B30_RS01170Stable P2CS identifier used across views.
GenomeGCF_015549545Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length218 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 218 aa (83.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa218 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
143-215 aa · 73 aa · 33.5% of protein
Raw token
Trans_reg_C:143:2.97e-24:215:78:77- Raw architecture: Response_reg:3:2.58e-30:112:111:111#Trans_reg_C:143:2.97e-24:215:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015549545::NZ_JADMZC010000001.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span226836-228817Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015549545::NZ_JADMZC010000001.1::G00011Context members
I2B30_RS01165I2B30_RS01170
Partner locus tags
I2B30_RS01165I2B30_RS01170
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008790770.1Primary protein accession used for annex mappings.
UniProt accessionE7GFZ5Primary UniProt accession resolved in the annex database.
UniProt IDE7GFZ5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2B30_RS01170Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADMZC010000001.1Sequence record reported by the local genomic context database.
Genomic interval228 161-228 817 nt657 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span226 836-228 817 ntGCF_015549545::NZ_JADMZC010000001.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015549545::NZ_JADMZC010000001.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADMZC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span226 836-228 817 nt1 982 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
226 836 nt228 817 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2B30_RS01165GCF_015549545#I2B30_RS01165
HKClassic
226 836-228 164 nt · Reverse (-)
I2B30_RS01170GCF_015549545#I2B30_RS01170
RROmpRCurrent focus
228 161-228 817 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000186525#HMPREF9488_RS18650Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1812458
Simplified PFAM architecture for RROC_1812458
PFAM domain coverage: 181 / 218 aa (83.0%)
1 aa218 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[143-214]
- Domain count: 2
- Matched identifier: RROC_1812458
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 143-214 ; Trans_reg_C 143-214
Cluster members and taxonomy
Representative gene: GCF_000186525#HMPREF9488_RS18650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 29 363 · GCF_015549545
AssemblyASM1554954v1 · Scaffoldhaploid
Genome composition3 804 098 bp · 30,0% GCClostridium paraputrificum
Signal transduction countsGenes 73 · HK 38 · RR 33CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key