1 Response_reg#1
4-118 aa · 115 aa · 49.6% of protein
Raw token
Response_reg:4:6.68e-17:118:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2C34_RS06720
Response regulator LytTR family
Roseburia faecis · GCF_015549075
ClassRRTypeLytTRLength232 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015549075#I2C34_RS06720Stable P2CS identifier used across views.
GenomeGCF_015549075Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage197 / 232 aa (84.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 LytTR#2
146-227 aa · 82 aa · 35.3% of protein
Raw token
LytTR:146:3.5e-20:227:88:98- Raw architecture: Response_reg:4:6.68e-17:118:117:111#LytTR:146:3.5e-20:227:88:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015549075::NZ_JADMYF010000005.1::G00048
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span210206-210904Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015549075::NZ_JADMYF010000005.1::G00048Context members
I2C34_RS06720
Partner locus tags
I2C34_RS06720
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022045514.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2C34_RS06720Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADMYF010000005.1Sequence record reported by the local genomic context database.
Genomic interval210 206-210 904 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span210 206-210 904 ntGCF_015549075::NZ_JADMYF010000005.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015549075::NZ_JADMYF010000005.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADMYF010000005.1All displayed genes belong to this local TCS context.
Neighborhood span210 206-210 904 nt699 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
210 206 nt210 904 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2C34_RS06720GCF_015549075#I2C34_RS06720
RRLytTRCurrent focus
210 206-210 904 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015549075#I2C34_RS06720The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1136016
Simplified PFAM architecture for RROC_1136016
PFAM domain coverage: 200 / 232 aa (86.2%)
1 aa232 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-117] | LytTR[141-226]
- Domain count: 2
- Matched identifier: RROC_1136016
- Positioned domains: Response_reg 4-117 ; LytTR 141-226
Cluster members and taxonomy
Representative gene: GCF_015549075#I2C34_RS06720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_015549075
AssemblyASM1554907v1 · Scaffoldhaploid
Genome composition3 476 915 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 108 · HK 47 · RR 60CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key