1 CheW#1
15-149 aa · 135 aa · 44.9% of protein
Raw token
CheW:15:7.16e-33:149:137:138P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2C34_RS05450
Response regulator CheV family
Roseburia faecis · GCF_015549075
ClassRRTypeCheVLength301 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015549075#I2C34_RS05450Stable P2CS identifier used across views.
GenomeGCF_015549075Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
CheWResponse_reg
Protein length301 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage256 / 301 aa (85.0%)Merged over positioned domains only.
Domain description1 CheW,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa301 aa
Domain-by-domain annotation2 items
2 Response_reg#2
173-293 aa · 121 aa · 40.2% of protein
Raw token
Response_reg:173:7.09e-23:293:122:111- Raw architecture: CheW:15:7.16e-33:149:137:138#Response_reg:173:7.09e-23:293:122:111
- Domain description: 1 CheW,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015549075::NZ_JADMYF010000004.1::G00045
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span182534-183439Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015549075::NZ_JADMYF010000004.1::G00045Context members
I2C34_RS05450
Partner locus tags
I2C34_RS05450
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195287349.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2C34_RS05450Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADMYF010000004.1Sequence record reported by the local genomic context database.
Genomic interval182 534-183 439 nt906 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span182 534-183 439 ntGCF_015549075::NZ_JADMYF010000004.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015549075::NZ_JADMYF010000004.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADMYF010000004.1All displayed genes belong to this local TCS context.
Neighborhood span182 534-183 439 nt906 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
182 534 nt183 439 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2C34_RS05450GCF_015549075#I2C34_RS05450
RRCheVCurrent focus
182 534-183 439 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015549075#I2C34_RS05450The current gene is the representative for this cluster.
PFAM architectureCheW + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0570973
Simplified PFAM architecture for RROC_0570973
PFAM domain coverage: 253 / 301 aa (84.1%)
1 aa301 aa
CheWResponse_reg
- Simplified architecture: CheW + Response_reg
- Raw architecture: CheW[16-148] | Response_reg[173-292]
- Domain count: 2
- Matched identifier: RROC_0570973
- Positioned domains: CheW 16-148 ; Response_reg 173-292
Cluster members and taxonomy
Representative gene: GCF_015549075#I2C34_RS05450
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_015549075
AssemblyASM1554907v1 · Scaffoldhaploid
Genome composition3 476 915 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 108 · HK 47 · RR 60CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key