1 HisKA#1
85-150 aa · 66 aa · 21.6% of protein
Raw token
HisKA:85:0.0000000548:150:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2C34_RS04675
Histidine kinase, Classic
Roseburia faecis · GCF_015549075
ClassHKTypeClassicLength305 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015549075#I2C34_RS04675Stable P2CS identifier used across views.
GenomeGCF_015549075Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length305 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 305 aa (57.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa305 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
197-305 aa · 109 aa · 35.7% of protein
Raw token
HATPase_c:197:1.62e-31:305:109:109- Raw architecture: HisKA:85:0.0000000548:150:66:64#HATPase_c:197:1.62e-31:305:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015549075::NZ_JADMYF010000004.1::G00043
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7182-8798Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015549075::NZ_JADMYF010000004.1::G00043Context members
I2C34_RS04675I2C34_RS04680
Partner locus tags
I2C34_RS04675I2C34_RS04680
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021434669.1Primary protein accession used for annex mappings.
UniProt accessionA0AAI9K1B4Primary UniProt accession resolved in the annex database.
UniProt IDA0AAI9K1B4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2C34_RS04675Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADMYF010000004.1Sequence record reported by the local genomic context database.
Genomic interval7 182-8 099 nt918 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span7 182-8 798 ntGCF_015549075::NZ_JADMYF010000004.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015549075::NZ_JADMYF010000004.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADMYF010000004.1All displayed genes belong to this local TCS context.
Neighborhood span7 182-8 798 nt1 617 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 182 nt8 798 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2C34_RS04675GCF_015549075#I2C34_RS04675
HKClassicCurrent focus
7 182-8 099 nt · Reverse (-)
I2C34_RS04680GCF_015549075#I2C34_RS04680
RROmpR
8 106-8 798 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000452265#C673_RS04940Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2882107
Simplified PFAM architecture for HKOC_2882107
PFAM domain coverage: 172 / 305 aa (56.4%)
1 aa305 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[85-148] | HATPase_c[197-304]
- Domain count: 2
- Matched identifier: HKOC_2882107
- Positioned domains: HisKA 85-148 ; HATPase_c 197-304
Cluster members and taxonomy
Representative gene: GCF_000452265#C673_RS04940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_015549075
AssemblyASM1554907v1 · Scaffoldhaploid
Genome composition3 476 915 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 108 · HK 47 · RR 60CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key