1 GGDEF#1
141-284 aa · 144 aa · 21.9% of protein
Raw token
GGDEF:141:5.84e-38:284:156:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2C34_RS03920
Response regulator, RpfG family
Roseburia faecis · GCF_015549075
ClassRRTypeRpfGLength657 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015549075#I2C34_RS03920Stable P2CS identifier used across views.
GenomeGCF_015549075Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
GGDEFResponse_regHD
Protein length657 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage382 / 657 aa (58.1%)Merged over positioned domains only.
Domain description1 GGDEF,1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa657 aa
Domain-by-domain annotation3 items
2 Response_reg#2
311-423 aa · 113 aa · 17.2% of protein
Raw token
Response_reg:311:6.51e-26:423:114:1113 HD#3
480-604 aa · 125 aa · 19.0% of protein
Raw token
HD:480:0.0000000000000158:604:125:110- Raw architecture: GGDEF:141:5.84e-38:284:156:160#Response_reg:311:6.51e-26:423:114:111#HD:480:0.0000000000000158:604:125:110
- Domain description: 1 GGDEF,1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015549075::NZ_JADMYF010000003.1::G00039
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span85378-87351Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015549075::NZ_JADMYF010000003.1::G00039Context members
I2C34_RS03920
Partner locus tags
I2C34_RS03920
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195287197.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2C34_RS03920Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADMYF010000003.1Sequence record reported by the local genomic context database.
Genomic interval85 378-87 351 nt1 974 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span85 378-87 351 ntGCF_015549075::NZ_JADMYF010000003.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015549075::NZ_JADMYF010000003.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADMYF010000003.1All displayed genes belong to this local TCS context.
Neighborhood span85 378-87 351 nt1 974 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
85 378 nt87 351 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2C34_RS03920GCF_015549075#I2C34_RS03920
RRRpfGCurrent focus
85 378-87 351 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015549075#I2C34_RS03920The current gene is the representative for this cluster.
PFAM architectureGGDEF + Response_reg + HD_53 domains in the representative PFAM annotation.
PFAM architecture for RROC_0035329
Simplified PFAM architecture for RROC_0035329
PFAM domain coverage: 406 / 657 aa (61.8%)
1 aa657 aa
GGDEFResponse_regHD_5
- Simplified architecture: GGDEF + Response_reg + HD_5
- Raw architecture: GGDEF[140-283] | Response_reg[311-423] | HD_5[475-623]
- Domain count: 3
- Matched identifier: RROC_0035329
- Positioned domains: GGDEF 140-283 ; Response_reg 311-423 ; HD_5 475-623
Cluster members and taxonomy
Representative gene: GCF_015549075#I2C34_RS03920
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_015549075
AssemblyASM1554907v1 · Scaffoldhaploid
Genome composition3 476 915 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 108 · HK 47 · RR 60CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key