1 HAMP#1
208-277 aa · 70 aa · 11.8% of protein
Raw token
HAMP:208:0.00000000000000182:277:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I1929_RS03115
Histidine kinase, Classic
Bifidobacterium adolescentis · GCF_015548665
ClassHKTypeClassicLength593 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015548665#I1929_RS03115Stable P2CS identifier used across views.
GenomeGCF_015548665Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length593 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage288 / 593 aa (48.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
288-357 aa · 70 aa · 11.8% of protein
Raw token
HisKA:288:2.38e-16:357:70:643 HATPase_c#3
421-568 aa · 148 aa · 25.0% of protein
Raw token
HATPase_c:421:6.71e-21:568:148:109- Raw architecture: HAMP:208:0.00000000000000182:277:70:69#HisKA:288:2.38e-16:357:70:64#HATPase_c:421:6.71e-21:568:148:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015548665::NZ_JADMXJ010000001.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span731240-733827Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015548665::NZ_JADMXJ010000001.1::G00006Context members
I1929_RS03110I1929_RS03115
Partner locus tags
I1929_RS03110I1929_RS03115
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_229026119.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI1929_RS03115Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADMXJ010000001.1Sequence record reported by the local genomic context database.
Genomic interval731 980-733 827 nt1 848 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span731 240-733 827 ntGCF_015548665::NZ_JADMXJ010000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015548665::NZ_JADMXJ010000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADMXJ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span731 240-733 827 nt2 588 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
731 240 nt733 827 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I1929_RS03110GCF_015548665#I1929_RS03110
RROmpR
731 240-731 971 nt · Forward (+)
I1929_RS03115GCF_015548665#I1929_RS03115
HKClassicCurrent focus
731 980-733 827 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000702865#T509_RS00300Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1093248
Simplified PFAM architecture for HKOC_1093248
PFAM domain coverage: 269 / 593 aa (45.4%)
1 aa593 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[225-277] | HisKA[289-357] | HATPase_c[421-567]
- Domain count: 3
- Matched identifier: HKOC_1093248
- Positioned domains: HAMP 225-277 ; HisKA 289-357 ; HATPase_c 421-567
Cluster members and taxonomy
Representative gene: GCF_000702865#T509_RS00300
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_015548665
AssemblyASM1554866v1 · Scaffoldhaploid
Genome composition2 222 729 bp · 59,5% GCBifidobacterium adolescentis
Signal transduction countsGenes 26 · HK 12 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key