1 Response_reg#1
9-146 aa · 138 aa · 46.8% of protein
Raw token
Response_reg:9:4.88e-27:146:138:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2B20_RS09000
Response regulator NarL family
Bifidobacterium longum · GCF_015547785
ClassRRTypeNarLLength295 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015547785#I2B20_RS09000Stable P2CS identifier used across views.
GenomeGCF_015547785Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length295 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage196 / 295 aa (66.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
232-289 aa · 58 aa · 19.7% of protein
Raw token
HTH_LUXR:232:6.03e-26:289:58:58- Raw architecture: Response_reg:9:4.88e-27:146:138:111#HTH_LUXR:232:6.03e-26:289:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015547785::NZ_JADMVV010000020.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span44799-48167Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015547785::NZ_JADMVV010000020.1::G00006Context members
I2B20_RS09000I2B20_RS09005
Partner locus tags
I2B20_RS09000I2B20_RS09005
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195261297.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2B20_RS09000Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADMVV010000020.1Sequence record reported by the local genomic context database.
Genomic interval44 799-45 686 nt888 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span44 799-48 167 ntGCF_015547785::NZ_JADMVV010000020.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015547785::NZ_JADMVV010000020.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADMVV010000020.1All displayed genes belong to this local TCS context.
Neighborhood span44 799-48 167 nt3 369 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 799 nt48 167 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2B20_RS09000GCF_015547785#I2B20_RS09000
RRNarLCurrent focus
44 799-45 686 nt · Reverse (-)
I2B20_RS09005GCF_015547785#I2B20_RS09005
HKClassic
45 708-48 167 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015547785#I2B20_RS09000The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0582005
Simplified PFAM architecture for RROC_0582005
PFAM domain coverage: 125 / 295 aa (42.4%)
1 aa295 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-77] | GerE[234-289]
- Domain count: 2
- Matched identifier: RROC_0582005
- Positioned domains: Response_reg 9-77 ; GerE 234-289
Cluster members and taxonomy
Representative gene: GCF_015547785#I2B20_RS09000
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 1 over 1 total members. Page 1 / 1.
GCF_015547785#I2B20_RS09000 (representative) |
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_015547785
AssemblyASM1554778v1 · Scaffoldhaploid
Genome composition2 432 888 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 23 · HK 10 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key