1 Response_reg#1
3-75 aa · 73 aa · 37.6% of protein
Raw token
Response_reg:3:2.76e-22:75:74:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ITJ18_RS02620
Response regulator OmpR family
Clostridioides difficile · GCF_015352355
ClassRRTypeOmpRLength194 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015352355#ITJ18_RS02620Stable P2CS identifier used across views.
GenomeGCF_015352355Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length194 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage148 / 194 aa (76.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa194 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
116-190 aa · 75 aa · 38.7% of protein
Raw token
Trans_reg_C:116:3.12e-35:190:75:77- Raw architecture: Response_reg:3:2.76e-22:75:74:111#Trans_reg_C:116:3.12e-35:190:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015352355::NZ_JADKRA010000006.1::G00053
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span77782-79500Genomic interval covered by the local TCS group.
Identifiers
Old locus tagITJ18_02620RefSeq proteinWP_194658624.1
Context group ID
GCF_015352355::NZ_JADKRA010000006.1::G00053Context members
ITJ18_RS02615ITJ18_RS02620
Partner locus tags
ITJ18_RS02615ITJ18_RS02620
Partner old locus tags
ITJ18_02615ITJ18_02620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_194658624.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagITJ18_RS02620Primary locus identifier stored in the genes table.
Old locus tagITJ18_02620Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JADKRA010000006.1Sequence record reported by the local genomic context database.
Genomic interval78 914-79 500 nt587 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span77 782-79 500 ntGCF_015352355::NZ_JADKRA010000006.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015352355::NZ_JADKRA010000006.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADKRA010000006.1All displayed genes belong to this local TCS context.
Neighborhood span77 782-79 500 nt1 719 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
77 782 nt79 500 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ITJ18_RS02615GCF_015352355#ITJ18_RS02615
HKClassic
77 782-78 864 nt · Reverse (-)
ITJ18_RS02620GCF_015352355#ITJ18_RS02620
RROmpRCurrent focus
78 914-79 500 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0208400Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1080336
Simplified PFAM architecture for RROC_1080336
PFAM domain coverage: 185 / 233 aa (79.4%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[155-230]
- Domain count: 2
- Matched identifier: RROC_1080336
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 155-230 ; Trans_reg_C 155-230
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0208400
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_015352355
AssemblyASM1535235v1 · Scaffoldhaploid
Genome composition4 181 959 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 107 · HK 50 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key