1 Response_reg#1
5-69 aa · 65 aa · 84.4% of protein
Raw token
Response_reg:5:0.00000000000255:69:65:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ITJ17_RS15735
Response regulator, CheY family
Clostridioides difficile · GCF_015352315
ClassRRTypeCheYLength77 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015352315#ITJ17_RS15735Stable P2CS identifier used across views.
GenomeGCF_015352315Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length77 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage65 / 77 aa (84.4%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa77 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:0.00000000000255:69:65:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015352315::NZ_JADKQZ010000084.1::G00057
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12030-13879Genomic interval covered by the local TCS group.
Identifiers
Old locus tagITJ17_15725RefSeq proteinWP_131038085.1
Context group ID
GCF_015352315::NZ_JADKQZ010000084.1::G00057Context members
ITJ17_RS15730ITJ17_RS15735
Partner locus tags
ITJ17_RS15730ITJ17_RS15735
Partner old locus tags
ITJ17_15720ITJ17_15725
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131038085.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagITJ17_RS15735Primary locus identifier stored in the genes table.
Old locus tagITJ17_15725Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JADKQZ010000084.1Sequence record reported by the local genomic context database.
Genomic interval13 649-13 879 nt231 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span12 030-13 879 ntGCF_015352315::NZ_JADKQZ010000084.1::G00057
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015352315::NZ_JADKQZ010000084.1::G00057Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADKQZ010000084.1All displayed genes belong to this local TCS context.
Neighborhood span12 030-13 879 nt1 850 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 030 nt13 879 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ITJ17_RS15730GCF_015352315#ITJ17_RS15730
HKClassic
12 030-13 535 nt · Forward (+)
ITJ17_RS15735GCF_015352315#ITJ17_RS15735
RRCheYCurrent focus
13 649-13 879 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_012276945#GSQ50_RS11900Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_1059373
Simplified PFAM architecture for RROC_1059373
PFAM domain coverage: 189 / 234 aa (80.8%)
1 aa234 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-116] | HTH_18[151-227]
- Domain count: 2
- Matched identifier: RROC_1059373
- Positioned domains: Response_reg 5-116 ; HTH_18 151-227
Cluster members and taxonomy
Representative gene: GCF_012276945#GSQ50_RS11900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_015352315
AssemblyASM1535231v1 · Scaffoldhaploid
Genome composition4 172 909 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 50 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key