1 Response_reg#1
1-109 aa · 109 aa · 47.4% of protein
Raw token
Response_reg:1:1.02e-29:109:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ITJ17_RS11605
Response regulator OmpR family
Clostridioides difficile · GCF_015352315
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015352315#ITJ17_RS11605Stable P2CS identifier used across views.
GenomeGCF_015352315Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 230 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-221 aa · 78 aa · 33.9% of protein
Raw token
Trans_reg_C:144:1.24e-30:221:78:77- Raw architecture: Response_reg:1:1.02e-29:109:110:111#Trans_reg_C:144:1.24e-30:221:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015352315::NZ_JADKQZ010000044.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span28278-30201Genomic interval covered by the local TCS group.
Identifiers
Old locus tagITJ17_11595RefSeq proteinWP_194646498.1
Context group ID
GCF_015352315::NZ_JADKQZ010000044.1::G00038Context members
ITJ17_RS11600ITJ17_RS11605
Partner locus tags
ITJ17_RS11600ITJ17_RS11605
Partner old locus tags
ITJ17_11590ITJ17_11595
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_194646498.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagITJ17_RS11605Primary locus identifier stored in the genes table.
Old locus tagITJ17_11595Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JADKQZ010000044.1Sequence record reported by the local genomic context database.
Genomic interval29 509-30 201 nt693 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span28 278-30 201 ntGCF_015352315::NZ_JADKQZ010000044.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015352315::NZ_JADKQZ010000044.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADKQZ010000044.1All displayed genes belong to this local TCS context.
Neighborhood span28 278-30 201 nt1 924 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
28 278 nt30 201 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ITJ17_RS11600GCF_015352315#ITJ17_RS11600
HKClassic
28 278-29 531 nt · Reverse (-)
ITJ17_RS11605GCF_015352315#ITJ17_RS11605
RROmpRCurrent focus
29 509-30 201 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000027105#CDR20291_RS07180Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0862707
Simplified PFAM architecture for RROC_0862707
PFAM domain coverage: 185 / 241 aa (76.8%)
1 aa241 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[12-120] | Trans_reg_C[156-231]
- Domain count: 2
- Matched identifier: RROC_0862707
- Positioned domains: Response_reg 12-120 ; Response_reg 12-120 ; Trans_reg_C 156-231 ; Trans_reg_C 156-231
Cluster members and taxonomy
Representative gene: GCF_000027105#CDR20291_RS07180
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_015352315
AssemblyASM1535231v1 · Scaffoldhaploid
Genome composition4 172 909 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 50 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key