1 Response_reg#1
9-118 aa · 110 aa · 46.8% of protein
Raw token
Response_reg:9:7.46e-31:118:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ITJ11_RS12625
Response regulator OmpR family
Clostridioides difficile · GCF_015352285
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015352285#ITJ11_RS12625Stable P2CS identifier used across views.
GenomeGCF_015352285Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 235 aa (79.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-232 aa · 77 aa · 32.8% of protein
Raw token
Trans_reg_C:156:2.39e-29:232:77:77- Raw architecture: Response_reg:9:7.46e-31:118:111:111#Trans_reg_C:156:2.39e-29:232:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015352285::NZ_JADKQW020000001.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2751533-2753691Genomic interval covered by the local TCS group.
Identifiers
Old locus tagITJ11_012630RefSeq proteinWP_021407797.1
Context group ID
GCF_015352285::NZ_JADKQW020000001.1::G00035Context members
ITJ11_RS12625ITJ11_RS12630
Partner locus tags
ITJ11_RS12625ITJ11_RS12630
Partner old locus tags
ITJ11_012630ITJ11_012635
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021407797.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagITJ11_RS12625Primary locus identifier stored in the genes table.
Old locus tagITJ11_012630Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JADKQW020000001.1Sequence record reported by the local genomic context database.
Genomic interval2 751 533-2 752 240 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 751 533-2 753 691 ntGCF_015352285::NZ_JADKQW020000001.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015352285::NZ_JADKQW020000001.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADKQW020000001.1All displayed genes belong to this local TCS context.
Neighborhood span2 751 533-2 753 691 nt2 159 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 751 533 nt2 753 691 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ITJ11_RS12625GCF_015352285#ITJ11_RS12625
RROmpRCurrent focus
2 751 533-2 752 240 nt · Forward (+)
ITJ11_RS12630GCF_015352285#ITJ11_RS12630
HKClassic
2 752 285-2 753 691 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000450785#QO7_RS03315Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1018273
Simplified PFAM architecture for RROC_1018273
PFAM domain coverage: 186 / 235 aa (79.1%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[9-117] | Trans_reg_C[156-232]
- Domain count: 2
- Matched identifier: RROC_1018273
- Positioned domains: Response_reg 9-117 ; Response_reg 9-117 ; Trans_reg_C 156-232 ; Trans_reg_C 156-232
Cluster members and taxonomy
Representative gene: GCF_000450785#QO7_RS03315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_015352285
AssemblyASM1535228v3 · Scaffoldhaploid
Genome composition4 112 687 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 91 · HK 43 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key