1 Response_reg#1
3-112 aa · 110 aa · 47.8% of protein
Raw token
Response_reg:3:6.07e-31:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ITJ11_RS12485
Response regulator OmpR family
Clostridioides difficile · GCF_015352285
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015352285#ITJ11_RS12485Stable P2CS identifier used across views.
GenomeGCF_015352285Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 230 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 33.5% of protein
Raw token
Trans_reg_C:151:7.67e-29:227:77:77- Raw architecture: Response_reg:3:6.07e-31:112:111:111#Trans_reg_C:151:7.67e-29:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015352285::NZ_JADKQW020000001.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2706765-2708374Genomic interval covered by the local TCS group.
Identifiers
Old locus tagITJ11_012485RefSeq proteinWP_022619676.1
Context group ID
GCF_015352285::NZ_JADKQW020000001.1::G00034Context members
ITJ11_RS12485ITJ11_RS12490
Partner locus tags
ITJ11_RS12485ITJ11_RS12490
Partner old locus tags
ITJ11_012485ITJ11_012490
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022619676.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagITJ11_RS12485Primary locus identifier stored in the genes table.
Old locus tagITJ11_012485Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JADKQW020000001.1Sequence record reported by the local genomic context database.
Genomic interval2 706 765-2 707 457 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 706 765-2 708 374 ntGCF_015352285::NZ_JADKQW020000001.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015352285::NZ_JADKQW020000001.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADKQW020000001.1All displayed genes belong to this local TCS context.
Neighborhood span2 706 765-2 708 374 nt1 610 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 706 765 nt2 708 374 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ITJ11_RS12485GCF_015352285#ITJ11_RS12485
RROmpRCurrent focus
2 706 765-2 707 457 nt · Forward (+)
ITJ11_RS12490GCF_015352285#ITJ11_RS12490
HKClassic
2 707 457-2 708 374 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000450785#QO7_RS03160Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1202432
Simplified PFAM architecture for RROC_1202432
PFAM domain coverage: 184 / 230 aa (80.0%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[154-227]
- Domain count: 2
- Matched identifier: RROC_1202432
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; Trans_reg_C 154-227 ; Trans_reg_C 154-227
Cluster members and taxonomy
Representative gene: GCF_000450785#QO7_RS03160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_015352285
AssemblyASM1535228v3 · Scaffoldhaploid
Genome composition4 112 687 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 91 · HK 43 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key