1 HisKA#1
344-410 aa · 67 aa · 7.9% of protein
Raw token
HisKA:344:4.53e-18:410:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ITJ07_RS02750
Histidine kinase, Hybrid
Clostridioides difficile · GCF_015352055
ClassHKTypeHybridLength852 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015352055#ITJ07_RS02750Stable P2CS identifier used across views.
GenomeGCF_015352055Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length852 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage409 / 852 aa (48.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation4 items
2 HATPase_c#2
458-576 aa · 119 aa · 14.0% of protein
Raw token
HATPase_c:458:5.26e-25:576:120:1093 Response_reg#3
592-696 aa · 105 aa · 12.3% of protein
Raw token
Response_reg:592:3.18e-22:696:105:1114 Response_reg#4
731-848 aa · 118 aa · 13.8% of protein
Raw token
Response_reg:731:5.63e-27:848:118:111- Raw architecture: HisKA:344:4.53e-18:410:67:64#HATPase_c:458:5.26e-25:576:120:109#Response_reg:592:3.18e-22:696:105:111#Response_reg:731:5.63e-27:848:118:111
- Domain description: 1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015352055::NZ_JADKQL030000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span537037-541605Genomic interval covered by the local TCS group.
Identifiers
Old locus tagITJ07_0002750RefSeq proteinWP_021370061.1
Context group ID
GCF_015352055::NZ_JADKQL030000001.1::G00003Context members
ITJ07_RS02750ITJ07_RS02760
Partner locus tags
ITJ07_RS02750ITJ07_RS02760
Partner old locus tags
ITJ07_0002750ITJ07_0002760
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021370061.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagITJ07_RS02750Primary locus identifier stored in the genes table.
Old locus tagITJ07_0002750Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JADKQL030000001.1Sequence record reported by the local genomic context database.
Genomic interval537 037-539 595 nt2 559 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span537 037-541 605 ntGCF_015352055::NZ_JADKQL030000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015352055::NZ_JADKQL030000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADKQL030000001.1All displayed genes belong to this local TCS context.
Neighborhood span537 037-541 605 nt4 569 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
537 037 nt541 605 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ITJ07_RS02750GCF_015352055#ITJ07_RS02750
HKHybridCurrent focus
537 037-539 595 nt · Reverse (-)
ITJ07_RS02760GCF_015352055#ITJ07_RS02760
RRRpfG
539 965-541 605 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449025#QCG_RS02785Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0484793
Simplified PFAM architecture for HKOC_0484793
PFAM domain coverage: 413 / 852 aa (48.5%)
1 aa852 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[344-410] | HATPase_c[458-575] | Response_reg[592-702] | Response_reg[731-847]
- Domain count: 4
- Matched identifier: HKOC_0484793
- Positioned domains: HisKA 344-410 ; HATPase_c 458-575 ; Response_reg 592-702 ; Response_reg 731-847
Cluster members and taxonomy
Representative gene: GCF_000449025#QCG_RS02785
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_015352055
AssemblyASM1535205v3 · Scaffoldhaploid
Genome composition4 268 059 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 47 · RR 51CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key