1 Response_reg#1
29-113 aa · 85 aa · 43.6% of protein
Raw token
Response_reg:29:1.04e-17:113:88:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ITJ06_RS18835
Response regulator LytTR family
Clostridioides difficile · GCF_015351925
ClassRRTypeLytTRLength195 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015351925#ITJ06_RS18835Stable P2CS identifier used across views.
GenomeGCF_015351925Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length195 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage146 / 195 aa (74.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa195 aa
Domain-by-domain annotation2 items
2 LytTR#2
134-194 aa · 61 aa · 31.3% of protein
Raw token
LytTR:134:1.23e-17:194:61:98- Raw architecture: Response_reg:29:1.04e-17:113:88:111#LytTR:134:1.23e-17:194:61:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015351925::NZ_JADKQC010000106.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2-587Genomic interval covered by the local TCS group.
Identifiers
Old locus tagITJ06_18830RefSeq proteinWP_334299123.1
Context group ID
GCF_015351925::NZ_JADKQC010000106.1::G00001Context members
ITJ06_RS18835
Partner locus tags
ITJ06_RS18835
Partner old locus tags
ITJ06_18830
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_334299123.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagITJ06_RS18835Primary locus identifier stored in the genes table.
Old locus tagITJ06_18830Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JADKQC010000106.1Sequence record reported by the local genomic context database.
Genomic interval2-587 nt586 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2-587 ntGCF_015351925::NZ_JADKQC010000106.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015351925::NZ_JADKQC010000106.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADKQC010000106.1All displayed genes belong to this local TCS context.
Neighborhood span2-587 nt586 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 nt587 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ITJ06_RS18835GCF_015351925#ITJ06_RS18835
RRLytTRCurrent focus
2-587 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015351925#ITJ06_RS18835The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2159305
Simplified PFAM architecture for RROC_2159305
PFAM domain coverage: 157 / 195 aa (80.5%)
1 aa195 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[18-113] | LytTR[134-194]
- Domain count: 2
- Matched identifier: RROC_2159305
- Positioned domains: Response_reg 18-113 ; LytTR 134-194
Cluster members and taxonomy
Representative gene: GCF_015351925#ITJ06_RS18835
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_015351925
AssemblyASM1535192v1 · Scaffoldhaploid
Genome composition4 103 471 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 50 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key