1 Response_reg#1
50-159 aa · 110 aa · 40.6% of protein
Raw token
Response_reg:50:3.2e-18:159:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ITJ15_RS18585
Response regulator OmpR family
Clostridioides difficile · GCF_015351875
ClassRRTypeOmpRLength271 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015351875#ITJ15_RS18585Stable P2CS identifier used across views.
GenomeGCF_015351875Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length271 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 271 aa (69.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa271 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
192-268 aa · 77 aa · 28.4% of protein
Raw token
Trans_reg_C:192:4.26e-21:268:78:77- Raw architecture: Response_reg:50:3.2e-18:159:111:111#Trans_reg_C:192:4.26e-21:268:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015351875::NZ_JADKQQ010000059.1::G00043
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2318-3135Genomic interval covered by the local TCS group.
Identifiers
Old locus tagITJ15_18565RefSeq proteinWP_236874754.1
Context group ID
GCF_015351875::NZ_JADKQQ010000059.1::G00043Context members
ITJ15_RS18585
Partner locus tags
ITJ15_RS18585
Partner old locus tags
ITJ15_18565
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_236874754.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagITJ15_RS18585Primary locus identifier stored in the genes table.
Old locus tagITJ15_18565Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JADKQQ010000059.1Sequence record reported by the local genomic context database.
Genomic interval2 318-3 135 nt818 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 318-3 135 ntGCF_015351875::NZ_JADKQQ010000059.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015351875::NZ_JADKQQ010000059.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADKQQ010000059.1All displayed genes belong to this local TCS context.
Neighborhood span2 318-3 135 nt818 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 318 nt3 135 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ITJ15_RS18585GCF_015351875#ITJ15_RS18585
RROmpRCurrent focus
2 318-3 135 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015351875#ITJ15_RS18585The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0612969
Simplified PFAM architecture for RROC_0612969
PFAM domain coverage: 185 / 271 aa (68.3%)
1 aa271 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[50-158] | Trans_reg_C[193-268]
- Domain count: 2
- Matched identifier: RROC_0612969
- Positioned domains: Response_reg 50-158 ; Trans_reg_C 193-268
Cluster members and taxonomy
Representative gene: GCF_015351875#ITJ15_RS18585
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_015351875
AssemblyASM1535187v1 · Scaffoldhaploid
Genome composition4 091 127 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 46 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key