1 HAMP#1
157-225 aa · 69 aa · 15.0% of protein
Raw token
HAMP:157:0.00000000219:225:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FUT12_RS05900
Histidine kinase, Classic
Bacillus mycoides · GCF_015071215
ClassHKTypeClassicLength460 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015071215#FUT12_RS05900Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length460 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 460 aa (53.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa460 aa
Domain-by-domain annotation3 items
2 HisKA#2
237-303 aa · 67 aa · 14.6% of protein
Raw token
HisKA:237:0.00000000000000142:303:67:643 HATPase_c#3
350-457 aa · 108 aa · 23.5% of protein
Raw token
HATPase_c:350:6.73e-31:457:108:109- Raw architecture: HAMP:157:0.00000000219:225:69:69#HisKA:237:0.00000000000000142:303:67:64#HATPase_c:350:6.73e-31:457:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015071215::NZ_VRME01000003.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span75242-77316Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFUT12_06010RefSeq proteinWP_193662861.1
Context group ID
GCF_015071215::NZ_VRME01000003.1::G00031Context members
FUT12_RS05900FUT12_RS05905
Partner locus tags
FUT12_RS05900FUT12_RS05905
Partner old locus tags
FUT12_06010FUT12_06015
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_193662861.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFUT12_RS05900Primary locus identifier stored in the genes table.
Old locus tagFUT12_06010Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VRME01000003.1Sequence record reported by the local genomic context database.
Genomic interval75 242-76 624 nt1 383 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span75 242-77 316 ntGCF_015071215::NZ_VRME01000003.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015071215::NZ_VRME01000003.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VRME01000003.1All displayed genes belong to this local TCS context.
Neighborhood span75 242-77 316 nt2 075 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
75 242 nt77 316 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FUT12_RS05900GCF_015071215#FUT12_RS05900
HKClassicCurrent focus
75 242-76 624 nt · Reverse (-)
FUT12_RS05905GCF_015071215#FUT12_RS05905
RROmpR
76 621-77 316 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015071215#FUT12_RS05900The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1838576
Simplified PFAM architecture for HKOC_1838576
PFAM domain coverage: 224 / 460 aa (48.7%)
1 aa460 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[176-225] | HisKA[238-302] | HATPase_c[350-458]
- Domain count: 3
- Matched identifier: HKOC_1838576
- Positioned domains: HAMP 176-225 ; HisKA 238-302 ; HATPase_c 350-458
Cluster members and taxonomy
Representative gene: GCF_015071215#FUT12_RS05900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_015071215
AssemblyASM1507121v1 · Contighaploid
Genome composition5 185 875 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 121 · HK 65 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key