1 HAMP#1
172-235 aa · 64 aa · 13.3% of protein
Raw token
HAMP:172:0.00000000000439:235:64:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FUT12_RS05570
Histidine kinase, Classic
Bacillus mycoides · GCF_015071215
ClassHKTypeClassicLength481 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015071215#FUT12_RS05570Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length481 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 481 aa (50.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa481 aa
Domain-by-domain annotation3 items
2 HisKA#2
248-314 aa · 67 aa · 13.9% of protein
Raw token
HisKA:248:0.000000000000507:314:67:643 HATPase_c#3
364-473 aa · 110 aa · 22.9% of protein
Raw token
HATPase_c:364:2.69e-25:473:110:109- Raw architecture: HAMP:172:0.00000000000439:235:64:69#HisKA:248:0.000000000000507:314:67:64#HATPase_c:364:2.69e-25:473:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015071215::NZ_VRME01000003.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8716-10850Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFUT12_05675RefSeq proteinWP_193662974.1
Context group ID
GCF_015071215::NZ_VRME01000003.1::G00028Context members
FUT12_RS05570FUT12_RS05575
Partner locus tags
FUT12_RS05570FUT12_RS05575
Partner old locus tags
FUT12_05675FUT12_05680
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_193662974.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFUT12_RS05570Primary locus identifier stored in the genes table.
Old locus tagFUT12_05675Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VRME01000003.1Sequence record reported by the local genomic context database.
Genomic interval8 716-10 161 nt1 446 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span8 716-10 850 ntGCF_015071215::NZ_VRME01000003.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015071215::NZ_VRME01000003.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VRME01000003.1All displayed genes belong to this local TCS context.
Neighborhood span8 716-10 850 nt2 135 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 716 nt10 850 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FUT12_RS05570GCF_015071215#FUT12_RS05570
HKClassicCurrent focus
8 716-10 161 nt · Reverse (-)
FUT12_RS05575GCF_015071215#FUT12_RS05575
RROmpR
10 161-10 850 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015071215#FUT12_RS05570The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1614356
Simplified PFAM architecture for HKOC_1614356
PFAM domain coverage: 225 / 481 aa (46.8%)
1 aa481 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[186-235] | HisKA[249-312] | HATPase_c[364-474]
- Domain count: 3
- Matched identifier: HKOC_1614356
- Positioned domains: HAMP 186-235 ; HisKA 249-312 ; HATPase_c 364-474
Cluster members and taxonomy
Representative gene: GCF_015071215#FUT12_RS05570
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_015071215
AssemblyASM1507121v1 · Contighaploid
Genome composition5 185 875 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 121 · HK 65 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key