1 Response_reg#1
13-122 aa · 110 aa · 58.5% of protein
Raw token
Response_reg:13:6.46e-35:122:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FT639_RS30585
Response regulator, unclassified
Bacillus mycoides · GCF_015071105
ClassRRTypeunclassifiedLength188 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015071105#FT639_RS30585Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length188 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage110 / 188 aa (58.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa188 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:13:6.46e-35:122:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015071105::NZ_VOVC01000132.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1530-2093Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFT639_31180RefSeq proteinWP_193654426.1
Context group ID
GCF_015071105::NZ_VOVC01000132.1::G00013Context members
FT639_RS30585
Partner locus tags
FT639_RS30585
Partner old locus tags
FT639_31180
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_193654426.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFT639_RS30585Primary locus identifier stored in the genes table.
Old locus tagFT639_31180Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VOVC01000132.1Sequence record reported by the local genomic context database.
Genomic interval1 530-2 093 nt564 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 530-2 093 ntGCF_015071105::NZ_VOVC01000132.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015071105::NZ_VOVC01000132.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VOVC01000132.1All displayed genes belong to this local TCS context.
Neighborhood span1 530-2 093 nt564 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 530 nt2 093 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FT639_RS30585GCF_015071105#FT639_RS30585
RRunclassifiedCurrent focus
1 530-2 093 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015071105#FT639_RS30585The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2173899
Simplified PFAM architecture for RROC_2173899
PFAM domain coverage: 141 / 188 aa (75.0%)
1 aa188 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[13-121] | Trans_reg_C[157-188]
- Domain count: 2
- Matched identifier: RROC_2173899
- Positioned domains: Response_reg 13-121 ; Trans_reg_C 157-188
Cluster members and taxonomy
Representative gene: GCF_015071105#FT639_RS30585
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_015071105
AssemblyASM1507110v1 · Contighaploid
Genome composition6 008 774 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 124 · HK 66 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key