1 Response_reg#1
6-115 aa · 110 aa · 60.8% of protein
Raw token
Response_reg:6:2.25e-34:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FT639_RS30560
Response regulator, unclassified
Bacillus mycoides · GCF_015071105
ClassRRTypeunclassifiedLength181 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015071105#FT639_RS30560Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length181 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage110 / 181 aa (60.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa181 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:6:2.25e-34:115:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015071105::NZ_VOVC01000131.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-543Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFT639_31165RefSeq proteinWP_193654423.1
Context group ID
GCF_015071105::NZ_VOVC01000131.1::G00012Context members
FT639_RS30560
Partner locus tags
FT639_RS30560
Partner old locus tags
FT639_31165
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_193654423.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFT639_RS30560Primary locus identifier stored in the genes table.
Old locus tagFT639_31165Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VOVC01000131.1Sequence record reported by the local genomic context database.
Genomic interval1-543 nt543 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-543 ntGCF_015071105::NZ_VOVC01000131.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015071105::NZ_VOVC01000131.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VOVC01000131.1All displayed genes belong to this local TCS context.
Neighborhood span1-543 nt543 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt543 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FT639_RS30560GCF_015071105#FT639_RS30560
RRunclassifiedCurrent focus
1-543 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015071105#FT639_RS30560The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2185070
Simplified PFAM architecture for RROC_2185070
PFAM domain coverage: 141 / 181 aa (77.9%)
1 aa181 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[150-181]
- Domain count: 2
- Matched identifier: RROC_2185070
- Positioned domains: Response_reg 6-114 ; Trans_reg_C 150-181
Cluster members and taxonomy
Representative gene: GCF_015071105#FT639_RS30560
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_015071105
AssemblyASM1507110v1 · Contighaploid
Genome composition6 008 774 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 124 · HK 66 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key