1 Response_reg#1
8-120 aa · 113 aa · 50.2% of protein
Raw token
Response_reg:8:4.68e-30:120:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FT639_RS26470
Response regulator NarL family
Bacillus mycoides · GCF_015071105
ClassRRTypeNarLLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015071105#FT639_RS26470Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 225 aa (76.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
161-218 aa · 58 aa · 25.8% of protein
Raw token
HTH_LUXR:161:2.37e-23:218:58:58- Raw architecture: Response_reg:8:4.68e-30:120:113:111#HTH_LUXR:161:2.37e-23:218:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015071105::NZ_VOVC01000051.1::G00056
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3403-5318Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFT639_26915RefSeq proteinWP_273541980.1
Context group ID
GCF_015071105::NZ_VOVC01000051.1::G00056Context members
FT639_RS26465FT639_RS26470
Partner locus tags
FT639_RS26465FT639_RS26470
Partner old locus tags
FT639_26910FT639_26915
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_273541980.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFT639_RS26470Primary locus identifier stored in the genes table.
Old locus tagFT639_26915Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VOVC01000051.1Sequence record reported by the local genomic context database.
Genomic interval4 641-5 318 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 403-5 318 ntGCF_015071105::NZ_VOVC01000051.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015071105::NZ_VOVC01000051.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VOVC01000051.1All displayed genes belong to this local TCS context.
Neighborhood span3 403-5 318 nt1 916 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 403 nt5 318 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FT639_RS26465GCF_015071105#FT639_RS26465
HKClassic
3 403-4 623 nt · Forward (+)
FT639_RS26470GCF_015071105#FT639_RS26470
RRNarLCurrent focus
4 641-5 318 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015071105#FT639_RS26470The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1491328
Simplified PFAM architecture for RROC_1491328
PFAM domain coverage: 169 / 225 aa (75.1%)
1 aa225 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[8-120] | GerE[163-218]
- Domain count: 2
- Matched identifier: RROC_1491328
- Positioned domains: Response_reg 8-120 ; GerE 163-218
Cluster members and taxonomy
Representative gene: GCF_015071105#FT639_RS26470
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_015071105
AssemblyASM1507110v1 · Contighaploid
Genome composition6 008 774 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 124 · HK 66 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key