1 Response_reg#1
4-114 aa · 111 aa · 48.5% of protein
Raw token
Response_reg:4:6.35e-38:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FT639_RS23210
Response regulator OmpR family
Bacillus mycoides · GCF_015071105
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015071105#FT639_RS23210Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 229 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-224 aa · 77 aa · 33.6% of protein
Raw token
Trans_reg_C:148:2.36e-30:224:77:77- Raw architecture: Response_reg:4:6.35e-38:114:111:111#Trans_reg_C:148:2.36e-30:224:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015071105::NZ_VOVC01000033.1::G00046
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span22129-24176Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFT639_23615RefSeq proteinWP_016102197.1
Context group ID
GCF_015071105::NZ_VOVC01000033.1::G00046Context members
FT639_RS23210FT639_RS23215
Partner locus tags
FT639_RS23210FT639_RS23215
Partner old locus tags
FT639_23615FT639_23620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016102197.1Primary protein accession used for annex mappings.
UniProt accessionA0A120EB07Primary UniProt accession resolved in the annex database.
UniProt IDA0A120EB07_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFT639_RS23210Primary locus identifier stored in the genes table.
Old locus tagFT639_23615Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VOVC01000033.1Sequence record reported by the local genomic context database.
Genomic interval22 129-22 818 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span22 129-24 176 ntGCF_015071105::NZ_VOVC01000033.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015071105::NZ_VOVC01000033.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VOVC01000033.1All displayed genes belong to this local TCS context.
Neighborhood span22 129-24 176 nt2 048 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 129 nt24 176 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FT639_RS23210GCF_015071105#FT639_RS23210
RROmpRCurrent focus
22 129-22 818 nt · Forward (+)
FT639_RS23215GCF_015071105#FT639_RS23215
HKClassic
22 815-24 176 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000399145#IIC_RS18595Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1249241
Simplified PFAM architecture for RROC_1249241
PFAM domain coverage: 187 / 229 aa (81.7%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-114] | Trans_reg_C[148-223]
- Domain count: 2
- Matched identifier: RROC_1249241
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; Trans_reg_C 148-223 ; Trans_reg_C 148-223
Cluster members and taxonomy
Representative gene: GCF_000399145#IIC_RS18595
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_015071105
AssemblyASM1507110v1 · Contighaploid
Genome composition6 008 774 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 124 · HK 66 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key