1 Response_reg#1
3-93 aa · 91 aa · 37.3% of protein
Raw token
Response_reg:3:0.00000188:93:91:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FT637_RS12765
Response regulator LytTR family
Bacillus cereus · GCF_015071065
ClassRRTypeLytTRLength244 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015071065#FT637_RS12765Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length244 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 244 aa (75.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa244 aa
Domain-by-domain annotation2 items
2 LytTR#2
150-241 aa · 92 aa · 37.7% of protein
Raw token
LytTR:150:1.9e-19:241:97:98- Raw architecture: Response_reg:3:0.00000188:93:91:111#LytTR:150:1.9e-19:241:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015071065::NZ_VOVA01000003.1::G00050
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span398912-399646Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFT637_12965RefSeq proteinWP_193646608.1
Context group ID
GCF_015071065::NZ_VOVA01000003.1::G00050Context members
FT637_RS12765
Partner locus tags
FT637_RS12765
Partner old locus tags
FT637_12965
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_193646608.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFT637_RS12765Primary locus identifier stored in the genes table.
Old locus tagFT637_12965Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VOVA01000003.1Sequence record reported by the local genomic context database.
Genomic interval398 912-399 646 nt735 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span398 912-399 646 ntGCF_015071065::NZ_VOVA01000003.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015071065::NZ_VOVA01000003.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VOVA01000003.1All displayed genes belong to this local TCS context.
Neighborhood span398 912-399 646 nt735 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
398 912 nt399 646 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FT637_RS12765GCF_015071065#FT637_RS12765
RRLytTRCurrent focus
398 912-399 646 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015071065#FT637_RS12765The current gene is the representative for this cluster.
PFAM architectureLytTR1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0813867
Simplified PFAM architecture for RROC_0813867
PFAM domain coverage: 91 / 244 aa (37.3%)
1 aa244 aa
LytTR
- Simplified architecture: LytTR
- Raw architecture: LytTR[150-240]
- Domain count: 1
- Matched identifier: RROC_0813867
- Positioned domains: LytTR 150-240
Cluster members and taxonomy
Representative gene: GCF_015071065#FT637_RS12765
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_015071065
AssemblyASM1507106v1 · Contighaploid
Genome composition5 797 289 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 130 · HK 71 · RR 59CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key