1 PAS#1
113-201 aa · 89 aa · 15.0% of protein
Raw token
PAS:113:0.00000000000436:201:89:113P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FT637_RS11275
Histidine kinase, Classic
Bacillus cereus · GCF_015071065
ClassHKTypeClassicLength592 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015071065#FT637_RS11275Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
PASPAS_4HisKAHATPase_c
Protein length592 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage359 / 592 aa (60.6%)Merged over positioned domains only.
Domain description1 PAS,1 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa592 aa
Domain-by-domain annotation4 items
2 PAS_4#2
245-348 aa · 104 aa · 17.6% of protein
Raw token
PAS_4:245:5.61e-24:348:109:1103 HisKA#3
362-424 aa · 63 aa · 10.6% of protein
Raw token
HisKA:362:2.77e-16:424:63:644 HATPase_c#4
469-571 aa · 103 aa · 17.4% of protein
Raw token
HATPase_c:469:1.24e-29:571:106:109- Raw architecture: PAS:113:0.00000000000436:201:89:113#PAS_4:245:5.61e-24:348:109:110#HisKA:362:2.77e-16:424:63:64#HATPase_c:469:1.24e-29:571:106:109
- Domain description: 1 PAS,1 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015071065::NZ_VOVA01000003.1::G00047
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span131221-132999Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFT637_11430RefSeq proteinWP_193646369.1
Context group ID
GCF_015071065::NZ_VOVA01000003.1::G00047Context members
FT637_RS11275
Partner locus tags
FT637_RS11275
Partner old locus tags
FT637_11430
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_193646369.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFT637_RS11275Primary locus identifier stored in the genes table.
Old locus tagFT637_11430Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VOVA01000003.1Sequence record reported by the local genomic context database.
Genomic interval131 221-132 999 nt1 779 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span131 221-132 999 ntGCF_015071065::NZ_VOVA01000003.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015071065::NZ_VOVA01000003.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VOVA01000003.1All displayed genes belong to this local TCS context.
Neighborhood span131 221-132 999 nt1 779 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
131 221 nt132 999 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FT637_RS11275GCF_015071065#FT637_RS11275
HKClassicCurrent focus
131 221-132 999 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015071065#FT637_RS11275The current gene is the representative for this cluster.
PFAM architecturePAS + PAS_4 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1101689
Simplified PFAM architecture for HKOC_1101689
PFAM domain coverage: 355 / 592 aa (60.0%)
1 aa592 aa
PASPAS_4HisKAHATPase_c
- Simplified architecture: PAS + PAS_4 + HisKA + HATPase_c
- Raw architecture: PAS[113-198] | PAS_4[245-348] | HisKA[364-424] | HATPase_c[469-572]
- Domain count: 4
- Matched identifier: HKOC_1101689
- Positioned domains: PAS 113-198 ; PAS_4 245-348 ; HisKA 364-424 ; HATPase_c 469-572
Cluster members and taxonomy
Representative gene: GCF_015071065#FT637_RS11275
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_015071065
AssemblyASM1507106v1 · Contighaploid
Genome composition5 797 289 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 130 · HK 71 · RR 59CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key