1 HAMP#1
164-233 aa · 70 aa · 14.3% of protein
Raw token
HAMP:164:0.00000000000000176:233:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FT637_RS10840
Histidine kinase, Classic
Bacillus cereus · GCF_015071065
ClassHKTypeClassicLength490 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015071065#FT637_RS10840Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length490 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage232 / 490 aa (47.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa490 aa
Domain-by-domain annotation3 items
2 HisKA#2
258-323 aa · 66 aa · 13.5% of protein
Raw token
HisKA:258:0.0000000000000449:323:66:643 HATPase_c#3
374-469 aa · 96 aa · 19.6% of protein
Raw token
HATPase_c:374:1.74e-16:469:96:109- Raw architecture: HAMP:164:0.00000000000000176:233:70:69#HisKA:258:0.0000000000000449:323:66:64#HATPase_c:374:1.74e-16:469:96:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015071065::NZ_VOVA01000003.1::G00044
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span52079-54209Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFT637_10985RefSeq proteinWP_193646300.1
Context group ID
GCF_015071065::NZ_VOVA01000003.1::G00044Context members
FT637_RS10840FT637_RS10845
Partner locus tags
FT637_RS10840FT637_RS10845
Partner old locus tags
FT637_10985FT637_10990
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_193646300.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFT637_RS10840Primary locus identifier stored in the genes table.
Old locus tagFT637_10985Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VOVA01000003.1Sequence record reported by the local genomic context database.
Genomic interval52 079-53 551 nt1 473 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span52 079-54 209 ntGCF_015071065::NZ_VOVA01000003.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015071065::NZ_VOVA01000003.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VOVA01000003.1All displayed genes belong to this local TCS context.
Neighborhood span52 079-54 209 nt2 131 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
52 079 nt54 209 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FT637_RS10840GCF_015071065#FT637_RS10840
HKClassicCurrent focus
52 079-53 551 nt · Reverse (-)
FT637_RS10845GCF_015071065#FT637_RS10845
RROmpR
53 544-54 209 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015071065#FT637_RS10840The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1536660
Simplified PFAM architecture for HKOC_1536660
PFAM domain coverage: 223 / 490 aa (45.5%)
1 aa490 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[181-233] | HisKA[259-323] | HATPase_c[373-477]
- Domain count: 3
- Matched identifier: HKOC_1536660
- Positioned domains: HAMP 181-233 ; HisKA 259-323 ; HATPase_c 373-477
Cluster members and taxonomy
Representative gene: GCF_015071065#FT637_RS10840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_015071065
AssemblyASM1507106v1 · Contighaploid
Genome composition5 797 289 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 130 · HK 71 · RR 59CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key