1 Response_reg#1
5-115 aa · 111 aa · 48.9% of protein
Raw token
Response_reg:5:3.6e-36:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FTO65_RS05345
Response regulator OmpR family
Bacillus cereus · GCF_015069665
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015069665#FTO65_RS05345Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 227 aa (82.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-225 aa · 76 aa · 33.5% of protein
Raw token
Trans_reg_C:150:1.93e-32:225:77:77- Raw architecture: Response_reg:5:3.6e-36:115:111:111#Trans_reg_C:150:1.93e-32:225:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015069665::NZ_VOUY01000001.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1043624-1045669Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFTO65_05410RefSeq proteinWP_137051940.1
Context group ID
GCF_015069665::NZ_VOUY01000001.1::G00016Context members
FTO65_RS05345FTO65_RS05350
Partner locus tags
FTO65_RS05345FTO65_RS05350
Partner old locus tags
FTO65_05410FTO65_05415
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_137051940.1Primary protein accession used for annex mappings.
UniProt accessionA0A4U2MYW8Primary UniProt accession resolved in the annex database.
UniProt IDA0A4U2MYW8_9BACIDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFTO65_RS05345Primary locus identifier stored in the genes table.
Old locus tagFTO65_05410Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VOUY01000001.1Sequence record reported by the local genomic context database.
Genomic interval1 043 624-1 044 307 nt684 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 043 624-1 045 669 ntGCF_015069665::NZ_VOUY01000001.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015069665::NZ_VOUY01000001.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VOUY01000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 043 624-1 045 669 nt2 046 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 043 624 nt1 045 669 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FTO65_RS05345GCF_015069665#FTO65_RS05345
RROmpRCurrent focus
1 043 624-1 044 307 nt · Forward (+)
FTO65_RS05350GCF_015069665#FTO65_RS05350
HKClassic
1 044 311-1 045 669 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_005217335#FC694_RS12420Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1369609
Simplified PFAM architecture for RROC_1369609
PFAM domain coverage: 185 / 227 aa (81.5%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-115] | Trans_reg_C[152-225]
- Domain count: 2
- Matched identifier: RROC_1369609
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; Trans_reg_C 152-225 ; Trans_reg_C 152-225
Cluster members and taxonomy
Representative gene: GCF_005217335#FC694_RS12420
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_015069665
AssemblyASM1506966v1 · Contighaploid
Genome composition6 030 118 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 110 · HK 58 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key