1 HisKA_3#1
244-302 aa · 59 aa · 7.4% of protein
Raw token
HisKA_3:244:0.0000000000000128:302:59:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BL5915_RS06745
Histidine kinase, Classic
Bifidobacterium longum subsp. longum · GCF_014900875
ClassHKTypeClassicLength797 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_014900875#BL5915_RS06745Stable P2CS identifier used across views.
GenomeGCF_014900875Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length797 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage224 / 797 aa (28.1%)Merged over positioned domains only.
Domain description2 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa797 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
345-438 aa · 94 aa · 11.8% of protein
Raw token
HATPase_c:345:0.000000000000212:438:110:1093 HisKA_3#3
694-764 aa · 71 aa · 8.9% of protein
Raw token
HisKA_3:694:0.0000272:764:71:68- Raw architecture: HisKA_3:244:0.0000000000000128:302:59:68#HATPase_c:345:0.000000000000212:438:110:109#HisKA_3:694:0.0000272:764:71:68
- Domain description: 2 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_014900875::NZ_CP062943.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1551400-1554767Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBL5915_06745RefSeq proteinWP_200407934.1
Context group ID
GCF_014900875::NZ_CP062943.1::G00007Context members
BL5915_RS06740BL5915_RS06745
Partner locus tags
BL5915_RS06740BL5915_RS06745
Partner old locus tags
BL5915_06740BL5915_06745
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_200407934.1Primary protein accession used for annex mappings.
UniProt accessionA0A7L9UHQ0Primary UniProt accession resolved in the annex database.
UniProt IDA0A7L9UHQ0_BIFLLDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBL5915_RS06745Primary locus identifier stored in the genes table.
Old locus tagBL5915_06745Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP062943.1Sequence record reported by the local genomic context database.
Genomic interval1 552 374-1 554 767 nt2 394 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 551 400-1 554 767 ntGCF_014900875::NZ_CP062943.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014900875::NZ_CP062943.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP062943.1All displayed genes belong to this local TCS context.
Neighborhood span1 551 400-1 554 767 nt3 368 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 551 400 nt1 554 767 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BL5915_RS06740GCF_014900875#BL5915_RS06740
RRNarL
1 551 400-1 552 290 nt · Reverse (-)
BL5915_RS06745GCF_014900875#BL5915_RS06745
HKClassicCurrent focus
1 552 374-1 554 767 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_014900875#BL5915_RS06745The current gene is the representative for this cluster.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0562417
Simplified PFAM architecture for HKOC_0562417
PFAM domain coverage: 412 / 797 aa (51.7%)
1 aa797 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[13-138] | HisKA_3[244-305] | HATPase_c[345-437] | DUF7134[485-615]
- Domain count: 4
- Matched identifier: HKOC_0562417
- Positioned domains: DUF7134 13-138 ; HisKA_3 244-305 ; HATPase_c 345-437 ; DUF7134 485-615
Cluster members and taxonomy
Representative gene: GCF_014900875#BL5915_RS06745
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_014900875
AssemblyASM1490087v1 · Chromosomehaploid
Genome composition2 548 838 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 25 · HK 11 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key