1 HisKA_3#1
201-265 aa · 65 aa · 15.9% of protein
Raw token
HisKA_3:201:0.0000000488:265:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BL7055_RS07465
Histidine kinase, Classic
Bifidobacterium longum subsp. longum · GCF_014898255
ClassHKTypeClassicLength410 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_014898255#BL7055_RS07465Stable P2CS identifier used across views.
GenomeGCF_014898255Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length410 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage136 / 410 aa (33.2%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa410 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
322-392 aa · 71 aa · 17.3% of protein
Raw token
HATPase_c:322:0.0000322:392:86:109- Raw architecture: HisKA_3:201:0.0000000488:265:65:68#HATPase_c:322:0.0000322:392:86:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_014898255::NZ_CP062964.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1756874-1758866Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBL7055_07455RefSeq proteinWP_200406566.1
Context group ID
GCF_014898255::NZ_CP062964.1::G00009Context members
BL7055_RS07465BL7055_RS07470
Partner locus tags
BL7055_RS07465BL7055_RS07470
Partner old locus tags
BL7055_07455BL7055_07460
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_200406566.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBL7055_RS07465Primary locus identifier stored in the genes table.
Old locus tagBL7055_07455Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP062964.1Sequence record reported by the local genomic context database.
Genomic interval1 756 874-1 758 106 nt1 233 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 756 874-1 758 866 ntGCF_014898255::NZ_CP062964.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014898255::NZ_CP062964.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP062964.1All displayed genes belong to this local TCS context.
Neighborhood span1 756 874-1 758 866 nt1 993 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 756 874 nt1 758 866 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BL7055_RS07465GCF_014898255#BL7055_RS07465
HKClassicCurrent focus
1 756 874-1 758 106 nt · Forward (+)
BL7055_RS07470GCF_014898255#BL7055_RS07470
RRNarL
1 758 141-1 758 866 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_014898255#BL7055_RS07465The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2356923
Simplified PFAM architecture for HKOC_2356923
PFAM domain coverage: 69 / 410 aa (16.8%)
1 aa410 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[200-268]
- Domain count: 1
- Matched identifier: HKOC_2356923
- Positioned domains: HisKA_3 200-268
Cluster members and taxonomy
Representative gene: GCF_014898255#BL7055_RS07465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_014898255
AssemblyASM1489825v1 · Chromosomehaploid
Genome composition2 448 147 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 22 · HK 10 · RR 11CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key