1 Response_reg#1
5-117 aa · 113 aa · 52.8% of protein
Raw token
Response_reg:5:2.82e-35:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RDJ68_RS08660
Response regulator NarL family
Agathobacter sp. · GCF_014866295
ClassRRTypeNarLLength214 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_014866295#RDJ68_RS08660Stable P2CS identifier used across views.
GenomeGCF_014866295Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length214 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 214 aa (79.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa214 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
149-205 aa · 57 aa · 26.6% of protein
Raw token
HTH_LUXR:149:7.51e-23:205:57:58- Raw architecture: Response_reg:5:2.82e-35:117:113:111#HTH_LUXR:149:7.51e-23:205:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_014866295::NZ_WGXK01000039.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span19515-21206Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_014866295::NZ_WGXK01000039.1::G00023Context members
RDJ68_RS08655RDJ68_RS08660
Partner locus tags
RDJ68_RS08655RDJ68_RS08660
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012744409.1Primary protein accession used for annex mappings.
UniProt accessionC4ZEG3Primary UniProt accession resolved in the annex database.
UniProt IDC4ZEG3_AGARVDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRDJ68_RS08660Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_WGXK01000039.1Sequence record reported by the local genomic context database.
Genomic interval20 562-21 206 nt645 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span19 515-21 206 ntGCF_014866295::NZ_WGXK01000039.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014866295::NZ_WGXK01000039.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WGXK01000039.1All displayed genes belong to this local TCS context.
Neighborhood span19 515-21 206 nt1 692 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 515 nt21 206 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RDJ68_RS08655GCF_014866295#RDJ68_RS08655
HKClassic
19 515-20 558 nt · Forward (+)
RDJ68_RS08660GCF_014866295#RDJ68_RS08660
RRNarLCurrent focus
20 562-21 206 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020605#EUBREC_RS16455Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1934833
Simplified PFAM architecture for RROC_1934833
PFAM domain coverage: 168 / 214 aa (78.5%)
1 aa214 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[5-116] | GerE[150-205]
- Domain count: 2
- Matched identifier: RROC_1934833
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; GerE 150-205 ; GerE 150-205
Cluster members and taxonomy
Representative gene: GCF_000020605#EUBREC_RS16455
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 021 311 · GCF_014866295
AssemblyASM1486629v1 · Contighaploid
Genome composition2 800 786 bp · 41,5% GCAgathobacter sp.
Signal transduction countsGenes 63 · HK 26 · RR 35CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key