1 HisKA#1
235-300 aa · 66 aa · 14.4% of protein
Raw token
HisKA:235:0.00000000000000659:300:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RDJ68_RS03495
Histidine kinase, Classic
Agathobacter sp. · GCF_014866295
ClassHKTypeClassicLength457 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_014866295#RDJ68_RS03495Stable P2CS identifier used across views.
GenomeGCF_014866295Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length457 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 457 aa (35.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa457 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
346-441 aa · 96 aa · 21.0% of protein
Raw token
HATPase_c:346:0.000000000000286:441:100:109- Raw architecture: HisKA:235:0.00000000000000659:300:66:64#HATPase_c:346:0.000000000000286:441:100:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_014866295::NZ_WGXK01000010.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8874-10936Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_014866295::NZ_WGXK01000010.1::G00004Context members
RDJ68_RS03490RDJ68_RS03495
Partner locus tags
RDJ68_RS03490RDJ68_RS03495
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_308804278.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRDJ68_RS03495Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_WGXK01000010.1Sequence record reported by the local genomic context database.
Genomic interval9 563-10 936 nt1 374 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 874-10 936 ntGCF_014866295::NZ_WGXK01000010.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014866295::NZ_WGXK01000010.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WGXK01000010.1All displayed genes belong to this local TCS context.
Neighborhood span8 874-10 936 nt2 063 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 874 nt10 936 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RDJ68_RS03490GCF_014866295#RDJ68_RS03490
RROmpR
8 874-9 566 nt · Forward (+)
RDJ68_RS03495GCF_014866295#RDJ68_RS03495
HKClassicCurrent focus
9 563-10 936 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_014866295#RDJ68_RS03495The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1879688
Simplified PFAM architecture for HKOC_1879688
PFAM domain coverage: 161 / 457 aa (35.2%)
1 aa457 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[235-300] | HATPase_c[347-441]
- Domain count: 2
- Matched identifier: HKOC_1879688
- Positioned domains: HisKA 235-300 ; HATPase_c 347-441
Cluster members and taxonomy
Representative gene: GCF_014866295#RDJ68_RS03495
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 021 311 · GCF_014866295
AssemblyASM1486629v1 · Contighaploid
Genome composition2 800 786 bp · 41,5% GCAgathobacter sp.
Signal transduction countsGenes 63 · HK 26 · RR 35CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key