1 Response_reg#1
3-112 aa · 110 aa · 47.8% of protein
Raw token
Response_reg:3:3.55e-34:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RDJ68_RS03490
Response regulator OmpR family
Agathobacter sp. · GCF_014866295
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_014866295#RDJ68_RS03490Stable P2CS identifier used across views.
GenomeGCF_014866295Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 230 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-226 aa · 77 aa · 33.5% of protein
Raw token
Trans_reg_C:150:2.17e-30:226:77:77- Raw architecture: Response_reg:3:3.55e-34:112:111:111#Trans_reg_C:150:2.17e-30:226:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_014866295::NZ_WGXK01000010.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8874-10936Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_014866295::NZ_WGXK01000010.1::G00004Context members
RDJ68_RS03490RDJ68_RS03495
Partner locus tags
RDJ68_RS03490RDJ68_RS03495
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_308804277.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRDJ68_RS03490Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_WGXK01000010.1Sequence record reported by the local genomic context database.
Genomic interval8 874-9 566 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 874-10 936 ntGCF_014866295::NZ_WGXK01000010.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014866295::NZ_WGXK01000010.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WGXK01000010.1All displayed genes belong to this local TCS context.
Neighborhood span8 874-10 936 nt2 063 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 874 nt10 936 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RDJ68_RS03490GCF_014866295#RDJ68_RS03490
RROmpRCurrent focus
8 874-9 566 nt · Forward (+)
RDJ68_RS03495GCF_014866295#RDJ68_RS03495
HKClassic
9 563-10 936 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_014866295#RDJ68_RS03490The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1219072
Simplified PFAM architecture for RROC_1219072
PFAM domain coverage: 186 / 230 aa (80.9%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[150-225]
- Domain count: 2
- Matched identifier: RROC_1219072
- Positioned domains: Response_reg 3-112 ; Trans_reg_C 150-225
Cluster members and taxonomy
Representative gene: GCF_014866295#RDJ68_RS03490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 021 311 · GCF_014866295
AssemblyASM1486629v1 · Contighaploid
Genome composition2 800 786 bp · 41,5% GCAgathobacter sp.
Signal transduction countsGenes 63 · HK 26 · RR 35CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key