1 HisKA#1
180-244 aa · 65 aa · 14.8% of protein
Raw token
HisKA:180:0.0000000000177:244:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FKX98_RS07940
Histidine kinase, Classic
Bifidobacterium breve · GCF_014779815
ClassHKTypeClassicLength438 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_014779815#FKX98_RS07940Stable P2CS identifier used across views.
GenomeGCF_014779815Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length438 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 438 aa (40.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa438 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
308-420 aa · 113 aa · 25.8% of protein
Raw token
HATPase_c:308:3.04e-30:420:113:109- Raw architecture: HisKA:180:0.0000000000177:244:65:64#HATPase_c:308:3.04e-30:420:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_014779815::NZ_VIDR01000013.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span98293-100432Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFKX98_08290RefSeq proteinWP_191137777.1
Context group ID
GCF_014779815::NZ_VIDR01000013.1::G00004Context members
FKX98_RS07940FKX98_RS07945
Partner locus tags
FKX98_RS07940FKX98_RS07945
Partner old locus tags
FKX98_08290FKX98_08295
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_191137777.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFKX98_RS07940Primary locus identifier stored in the genes table.
Old locus tagFKX98_08290Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VIDR01000013.1Sequence record reported by the local genomic context database.
Genomic interval98 293-99 609 nt1 317 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span98 293-100 432 ntGCF_014779815::NZ_VIDR01000013.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014779815::NZ_VIDR01000013.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VIDR01000013.1All displayed genes belong to this local TCS context.
Neighborhood span98 293-100 432 nt2 140 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
98 293 nt100 432 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FKX98_RS07940GCF_014779815#FKX98_RS07940
HKClassicCurrent focus
98 293-99 609 nt · Forward (+)
FKX98_RS07945GCF_014779815#FKX98_RS07945
RROmpR
99 728-100 432 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_014779815#FKX98_RS07940The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2096191
Simplified PFAM architecture for HKOC_2096191
PFAM domain coverage: 176 / 438 aa (40.2%)
1 aa438 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[180-244] | HATPase_c[309-419]
- Domain count: 2
- Matched identifier: HKOC_2096191
- Positioned domains: HisKA 180-244 ; HATPase_c 309-419
Cluster members and taxonomy
Representative gene: GCF_014779815#FKX98_RS07940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_014779815
AssemblyASM1477981v1 · Contighaploid
Genome composition2 413 974 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 24 · HK 10 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key