1 Response_reg#1
12-106 aa · 95 aa · 40.9% of protein
Raw token
Response_reg:12:0.000000000241:106:95:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FKX98_RS01205
Response regulator NarL family
Bifidobacterium breve · GCF_014779815
ClassRRTypeNarLLength232 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_014779815#FKX98_RS01205Stable P2CS identifier used across views.
GenomeGCF_014779815Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 232 aa (65.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
170-225 aa · 56 aa · 24.1% of protein
Raw token
HTH_LUXR:170:3.65e-20:225:56:58- Raw architecture: Response_reg:12:0.000000000241:106:95:111#HTH_LUXR:170:3.65e-20:225:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_014779815::NZ_VIDR01000001.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span252915-253613Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFKX98_01265RefSeq proteinWP_191137333.1
Context group ID
GCF_014779815::NZ_VIDR01000001.1::G00003Context members
FKX98_RS01205
Partner locus tags
FKX98_RS01205
Partner old locus tags
FKX98_01265
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_191137333.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4U059Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4U059_BIFBRDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFKX98_RS01205Primary locus identifier stored in the genes table.
Old locus tagFKX98_01265Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VIDR01000001.1Sequence record reported by the local genomic context database.
Genomic interval252 915-253 613 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span252 915-253 613 ntGCF_014779815::NZ_VIDR01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014779815::NZ_VIDR01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VIDR01000001.1All displayed genes belong to this local TCS context.
Neighborhood span252 915-253 613 nt699 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
252 915 nt253 613 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FKX98_RS01205GCF_014779815#FKX98_RS01205
RRNarLCurrent focus
252 915-253 613 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_014779815#FKX98_RS01205The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1135593
Simplified PFAM architecture for RROC_1135593
PFAM domain coverage: 156 / 232 aa (67.2%)
1 aa232 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[11-113] | GerE[172-224]
- Domain count: 2
- Matched identifier: RROC_1135593
- Positioned domains: Response_reg 11-113 ; GerE 172-224
Cluster members and taxonomy
Representative gene: GCF_014779815#FKX98_RS01205
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_014779815
AssemblyASM1477981v1 · Contighaploid
Genome composition2 413 974 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 24 · HK 10 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key