1 Response_reg#1
6-119 aa · 114 aa · 20.9% of protein
Raw token
Response_reg:6:4.41e-32:119:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H8S76_RS13245
Response regulator, unclassified
Blautia celeris · GCF_014287615
ClassRRTypeunclassifiedLength545 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_014287615#H8S76_RS13245Stable P2CS identifier used across views.
GenomeGCF_014287615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length545 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage195 / 545 aa (35.8%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa545 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
440-480 aa · 41 aa · 7.5% of protein
Raw token
HTH_AraC:440:0.0000613:480:41:423 HTH_AraC#3
489-528 aa · 40 aa · 7.3% of protein
Raw token
HTH_AraC:489:0.0000000123:528:40:42- Raw architecture: Response_reg:6:4.41e-32:119:114:111#HTH_AraC:440:0.0000613:480:41:42#HTH_AraC:489:0.0000000123:528:40:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_014287615::NZ_JACOOU010000005.1::G00085
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span262352-269529Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH8S76_13250RefSeq proteinWP_033142164.1
Context group ID
GCF_014287615::NZ_JACOOU010000005.1::G00085Context members
H8S76_RS13245H8S76_RS13250H8S76_RS13255H8S76_RS13260
Partner locus tags
H8S76_RS13245H8S76_RS13250H8S76_RS13255H8S76_RS13260
Partner old locus tags
H8S76_13250H8S76_13255H8S76_13260H8S76_13265
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033142164.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7FFI0Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7FFI0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH8S76_RS13245Primary locus identifier stored in the genes table.
Old locus tagH8S76_13250Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACOOU010000005.1Sequence record reported by the local genomic context database.
Genomic interval262 352-263 989 nt1 638 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span262 352-269 529 ntGCF_014287615::NZ_JACOOU010000005.1::G00085
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014287615::NZ_JACOOU010000005.1::G00085Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACOOU010000005.1All displayed genes belong to this local TCS context.
Neighborhood span262 352-269 529 nt7 178 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
262 352 nt269 529 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
H8S76_RS13245GCF_014287615#H8S76_RS13245
RRunclassifiedCurrent focus
262 352-263 989 nt · Reverse (-)
H8S76_RS13250GCF_014287615#H8S76_RS13250
HKClassic
264 013-265 812 nt · Reverse (-)
H8S76_RS13255GCF_014287615#H8S76_RS13255
RRunclassified
266 045-267 658 nt · Reverse (-)
H8S76_RS13260GCF_014287615#H8S76_RS13260
HKClassic
267 688-269 529 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS05075Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0081154
Simplified PFAM architecture for RROC_0081154
PFAM domain coverage: 191 / 545 aa (35.0%)
1 aa545 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[6-118] | HTH_18[453-530]
- Domain count: 2
- Matched identifier: RROC_0081154
- Positioned domains: Response_reg 6-118 ; Response_reg 6-118 ; HTH_18 453-530 ; HTH_18 453-530
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS05075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 763 026 · GCF_014287615
AssemblyASM1428761v1 · Contigreference genome · haploid
Genome composition6 189 697 bp · 46,5% GCBlautia celeris
Signal transduction countsGenes 263 · HK 136 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key