1 Response_reg#1
4-112 aa · 109 aa · 48.9% of protein
Raw token
Response_reg:4:6.25e-32:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H8S76_RS13015
Response regulator OmpR family
Blautia celeris · GCF_014287615
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_014287615#H8S76_RS13015Stable P2CS identifier used across views.
GenomeGCF_014287615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 223 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-216 aa · 73 aa · 32.7% of protein
Raw token
Trans_reg_C:144:3.68e-25:216:75:77- Raw architecture: Response_reg:4:6.25e-32:112:111:111#Trans_reg_C:144:3.68e-25:216:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_014287615::NZ_JACOOU010000005.1::G00080
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span208381-210386Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH8S76_13020RefSeq proteinWP_103731038.1
Context group ID
GCF_014287615::NZ_JACOOU010000005.1::G00080Context members
H8S76_RS13010H8S76_RS13015
Partner locus tags
H8S76_RS13010H8S76_RS13015
Partner old locus tags
H8S76_13015H8S76_13020
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_103731038.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1DIH8Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1DIH8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH8S76_RS13015Primary locus identifier stored in the genes table.
Old locus tagH8S76_13020Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACOOU010000005.1Sequence record reported by the local genomic context database.
Genomic interval209 715-210 386 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span208 381-210 386 ntGCF_014287615::NZ_JACOOU010000005.1::G00080
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014287615::NZ_JACOOU010000005.1::G00080Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACOOU010000005.1All displayed genes belong to this local TCS context.
Neighborhood span208 381-210 386 nt2 006 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
208 381 nt210 386 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H8S76_RS13010GCF_014287615#H8S76_RS13010
HKClassic
208 381-209 736 nt · Reverse (-)
H8S76_RS13015GCF_014287615#H8S76_RS13015
RROmpRCurrent focus
209 715-210 386 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS04845Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1600300
Simplified PFAM architecture for RROC_1600300
PFAM domain coverage: 182 / 223 aa (81.6%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-111] | Trans_reg_C[144-217]
- Domain count: 2
- Matched identifier: RROC_1600300
- Positioned domains: Response_reg 4-111 ; Response_reg 4-111 ; Trans_reg_C 144-217 ; Trans_reg_C 144-217
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS04845
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 763 026 · GCF_014287615
AssemblyASM1428761v1 · Contigreference genome · haploid
Genome composition6 189 697 bp · 46,5% GCBlautia celeris
Signal transduction countsGenes 263 · HK 136 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key