1 HAMP#1
46-115 aa · 70 aa · 19.5% of protein
Raw token
HAMP:46:0.00000000000183:115:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H8S76_RS08890
Histidine kinase, Classic
Blautia celeris · GCF_014287615
ClassHKTypeClassicLength359 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_014287615#H8S76_RS08890Stable P2CS identifier used across views.
GenomeGCF_014287615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length359 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 359 aa (67.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa359 aa
Domain-by-domain annotation3 items
2 HisKA#2
140-205 aa · 66 aa · 18.4% of protein
Raw token
HisKA:140:0.0000000000001:205:66:643 HATPase_c#3
251-356 aa · 106 aa · 29.5% of protein
Raw token
HATPase_c:251:1.23e-18:356:107:109- Raw architecture: HAMP:46:0.00000000000183:115:70:69#HisKA:140:0.0000000000001:205:66:64#HATPase_c:251:1.23e-18:356:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_014287615::NZ_JACOOU010000003.1::G00055
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span138806-140553Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH8S76_08890RefSeq proteinWP_330425208.1
Context group ID
GCF_014287615::NZ_JACOOU010000003.1::G00055Context members
H8S76_RS08885H8S76_RS08890
Partner locus tags
H8S76_RS08885H8S76_RS08890
Partner old locus tags
H8S76_08885H8S76_08890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330425208.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH8S76_RS08890Primary locus identifier stored in the genes table.
Old locus tagH8S76_08890Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACOOU010000003.1Sequence record reported by the local genomic context database.
Genomic interval139 474-140 553 nt1 080 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span138 806-140 553 ntGCF_014287615::NZ_JACOOU010000003.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014287615::NZ_JACOOU010000003.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACOOU010000003.1All displayed genes belong to this local TCS context.
Neighborhood span138 806-140 553 nt1 748 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
138 806 nt140 553 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H8S76_RS08885GCF_014287615#H8S76_RS08885
RROmpR
138 806-139 471 nt · Forward (+)
H8S76_RS08890GCF_014287615#H8S76_RS08890
HKClassicCurrent focus
139 474-140 553 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS16740Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2754330
Simplified PFAM architecture for HKOC_2754330
PFAM domain coverage: 224 / 359 aa (62.4%)
1 aa359 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[63-115] | HisKA[140-205] | HATPase_c[252-356]
- Domain count: 3
- Matched identifier: HKOC_2754330
- Positioned domains: HAMP 63-115 ; HisKA 140-205 ; HATPase_c 252-356
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS16740
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 763 026 · GCF_014287615
AssemblyASM1428761v1 · Contigreference genome · haploid
Genome composition6 189 697 bp · 46,5% GCBlautia celeris
Signal transduction countsGenes 263 · HK 136 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key