1 Response_reg#1
6-118 aa · 113 aa · 22.4% of protein
Raw token
Response_reg:6:6.74e-32:118:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H8S76_RS04595
Response regulator, unclassified
Blautia celeris · GCF_014287615
ClassRRTypeunclassifiedLength505 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_014287615#H8S76_RS04595Stable P2CS identifier used across views.
GenomeGCF_014287615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length505 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage185 / 505 aa (36.6%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa505 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
414-455 aa · 42 aa · 8.3% of protein
Raw token
HTH_AraC:414:0.000000000354:455:42:423 HTH_AraC#3
475-504 aa · 30 aa · 5.9% of protein
Raw token
HTH_AraC:475:0.0000000329:504:30:42- Raw architecture: Response_reg:6:6.74e-32:118:113:111#HTH_AraC:414:0.000000000354:455:42:42#HTH_AraC:475:0.0000000329:504:30:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_014287615::NZ_JACOOU010000001.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1065515-1068795Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH8S76_04595RefSeq proteinWP_186971030.1
Context group ID
GCF_014287615::NZ_JACOOU010000001.1::G00030Context members
H8S76_RS04590H8S76_RS04595
Partner locus tags
H8S76_RS04590H8S76_RS04595
Partner old locus tags
H8S76_04590H8S76_04595
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_186971030.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7F8G2Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7F8G2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH8S76_RS04595Primary locus identifier stored in the genes table.
Old locus tagH8S76_04595Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACOOU010000001.1Sequence record reported by the local genomic context database.
Genomic interval1 067 278-1 068 795 nt1 518 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 065 515-1 068 795 ntGCF_014287615::NZ_JACOOU010000001.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014287615::NZ_JACOOU010000001.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACOOU010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 065 515-1 068 795 nt3 281 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 065 515 nt1 068 795 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H8S76_RS04590GCF_014287615#H8S76_RS04590
HKClassic
1 065 515-1 067 257 nt · Forward (+)
H8S76_RS04595GCF_014287615#H8S76_RS04595
RRunclassifiedCurrent focus
1 067 278-1 068 795 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_014287615#H8S76_RS04595The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_AraC + HTH_AraC3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0152841
Simplified PFAM architecture for RROC_0152841
PFAM domain coverage: 182 / 505 aa (36.0%)
1 aa505 aa
Response_regHTH_AraCHTH_AraC
- Simplified architecture: Response_reg + HTH_AraC + HTH_AraC
- Raw architecture: Response_reg[6-117] | HTH_AraC[416-455] | HTH_AraC[475-504]
- Domain count: 3
- Matched identifier: RROC_0152841
- Positioned domains: Response_reg 6-117 ; HTH_AraC 416-455 ; HTH_AraC 475-504
Cluster members and taxonomy
Representative gene: GCF_014287615#H8S76_RS04595
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 763 026 · GCF_014287615
AssemblyASM1428761v1 · Contigreference genome · haploid
Genome composition6 189 697 bp · 46,5% GCBlautia celeris
Signal transduction countsGenes 263 · HK 136 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key