1 HAMP#1
294-360 aa · 67 aa · 11.6% of protein
Raw token
HAMP:294:0.0000000000868:360:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H8S76_RS04590
Histidine kinase, Classic
Blautia celeris · GCF_014287615
ClassHKTypeClassicLength580 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_014287615#H8S76_RS04590Stable P2CS identifier used across views.
GenomeGCF_014287615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length580 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 580 aa (42.9%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa580 aa
Domain-by-domain annotation3 items
2 His_kinase#2
377-457 aa · 81 aa · 14.0% of protein
Raw token
His_kinase:377:7.7e-30:457:81:803 HATPase_c#3
477-577 aa · 101 aa · 17.4% of protein
Raw token
HATPase_c:477:0.0000111:577:106:109- Raw architecture: HAMP:294:0.0000000000868:360:67:69#His_kinase:377:7.7e-30:457:81:80#HATPase_c:477:0.0000111:577:106:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_014287615::NZ_JACOOU010000001.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1065515-1068795Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH8S76_04590RefSeq proteinWP_103732287.1
Context group ID
GCF_014287615::NZ_JACOOU010000001.1::G00030Context members
H8S76_RS04590H8S76_RS04595
Partner locus tags
H8S76_RS04590H8S76_RS04595
Partner old locus tags
H8S76_04590H8S76_04595
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_103732287.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7F8H7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7F8H7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH8S76_RS04590Primary locus identifier stored in the genes table.
Old locus tagH8S76_04590Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACOOU010000001.1Sequence record reported by the local genomic context database.
Genomic interval1 065 515-1 067 257 nt1 743 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 065 515-1 068 795 ntGCF_014287615::NZ_JACOOU010000001.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014287615::NZ_JACOOU010000001.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACOOU010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 065 515-1 068 795 nt3 281 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 065 515 nt1 068 795 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H8S76_RS04590GCF_014287615#H8S76_RS04590
HKClassicCurrent focus
1 065 515-1 067 257 nt · Forward (+)
H8S76_RS04595GCF_014287615#H8S76_RS04595
RRunclassified
1 067 278-1 068 795 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS05625Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1163158
Simplified PFAM architecture for HKOC_1163158
PFAM domain coverage: 132 / 580 aa (22.8%)
1 aa580 aa
HAMPHis_kinase
- Simplified architecture: HAMP + His_kinase
- Raw architecture: HAMP[311-361] | His_kinase[377-457]
- Domain count: 2
- Matched identifier: HKOC_1163158
- Positioned domains: HAMP 311-361 ; His_kinase 377-457
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS05625
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 763 026 · GCF_014287615
AssemblyASM1428761v1 · Contigreference genome · haploid
Genome composition6 189 697 bp · 46,5% GCBlautia celeris
Signal transduction countsGenes 263 · HK 136 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key