1 Response_reg#1
4-116 aa · 113 aa · 20.9% of protein
Raw token
Response_reg:4:4.33e-18:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H8S76_RS04050
Response regulator, unclassified
Blautia celeris · GCF_014287615
ClassRRTypeunclassifiedLength541 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_014287615#H8S76_RS04050Stable P2CS identifier used across views.
GenomeGCF_014287615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length541 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage148 / 541 aa (27.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa541 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
495-529 aa · 35 aa · 6.5% of protein
Raw token
HTH_AraC:495:0.00000246:529:35:42- Raw architecture: Response_reg:4:4.33e-18:116:113:111#HTH_AraC:495:0.00000246:529:35:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_014287615::NZ_JACOOU010000001.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span913328-916677Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH8S76_04050RefSeq proteinWP_103731518.1
Context group ID
GCF_014287615::NZ_JACOOU010000001.1::G00027Context members
H8S76_RS04050H8S76_RS04055
Partner locus tags
H8S76_RS04050H8S76_RS04055
Partner old locus tags
H8S76_04050H8S76_04055
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_103731518.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7F9Y3Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7F9Y3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH8S76_RS04050Primary locus identifier stored in the genes table.
Old locus tagH8S76_04050Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACOOU010000001.1Sequence record reported by the local genomic context database.
Genomic interval913 328-914 953 nt1 626 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span913 328-916 677 ntGCF_014287615::NZ_JACOOU010000001.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014287615::NZ_JACOOU010000001.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACOOU010000001.1All displayed genes belong to this local TCS context.
Neighborhood span913 328-916 677 nt3 350 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
913 328 nt916 677 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H8S76_RS04050GCF_014287615#H8S76_RS04050
RRunclassifiedCurrent focus
913 328-914 953 nt · Reverse (-)
H8S76_RS04055GCF_014287615#H8S76_RS04055
HKClassic
914 950-916 677 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS06175Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0087976
Simplified PFAM architecture for RROC_0087976
PFAM domain coverage: 186 / 541 aa (34.4%)
1 aa541 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-111] | HTH_18[454-531]
- Domain count: 2
- Matched identifier: RROC_0087976
- Positioned domains: Response_reg 4-111 ; Response_reg 4-111 ; HTH_18 454-531 ; HTH_18 454-531
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS06175
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 763 026 · GCF_014287615
AssemblyASM1428761v1 · Contigreference genome · haploid
Genome composition6 189 697 bp · 46,5% GCBlautia celeris
Signal transduction countsGenes 263 · HK 136 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key