1 Response_reg#1
4-114 aa · 111 aa · 40.1% of protein
Raw token
Response_reg:4:5.13e-28:114:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H8S76_RS03890
Response regulator, unclassified
Blautia celeris · GCF_014287615
ClassRRTypeunclassifiedLength277 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_014287615#H8S76_RS03890Stable P2CS identifier used across views.
GenomeGCF_014287615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length277 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage190 / 277 aa (68.6%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa277 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
165-206 aa · 42 aa · 15.2% of protein
Raw token
HTH_AraC:165:0.0000000104:206:42:423 HTH_AraC#3
220-256 aa · 37 aa · 13.4% of protein
Raw token
HTH_AraC:220:0.000000423:256:37:42- Raw architecture: Response_reg:4:5.13e-28:114:113:111#HTH_AraC:165:0.0000000104:206:42:42#HTH_AraC:220:0.000000423:256:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_014287615::NZ_JACOOU010000001.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span873460-876079Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH8S76_03890RefSeq proteinWP_054350371.1
Context group ID
GCF_014287615::NZ_JACOOU010000001.1::G00025Context members
H8S76_RS03885H8S76_RS03890
Partner locus tags
H8S76_RS03885H8S76_RS03890
Partner old locus tags
H8S76_03885H8S76_03890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_054350371.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7F876Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7F876_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH8S76_RS03890Primary locus identifier stored in the genes table.
Old locus tagH8S76_03890Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACOOU010000001.1Sequence record reported by the local genomic context database.
Genomic interval875 246-876 079 nt834 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span873 460-876 079 ntGCF_014287615::NZ_JACOOU010000001.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014287615::NZ_JACOOU010000001.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACOOU010000001.1All displayed genes belong to this local TCS context.
Neighborhood span873 460-876 079 nt2 620 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
873 460 nt876 079 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H8S76_RS03885GCF_014287615#H8S76_RS03885
HKClassic
873 460-875 223 nt · Reverse (-)
H8S76_RS03890GCF_014287615#H8S76_RS03890
RRunclassifiedCurrent focus
875 246-876 079 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS06335Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0601567
Simplified PFAM architecture for RROC_0601567
PFAM domain coverage: 189 / 277 aa (68.2%)
1 aa277 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-114] | HTH_18[179-256]
- Domain count: 2
- Matched identifier: RROC_0601567
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; HTH_18 179-256 ; HTH_18 179-256
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS06335
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 763 026 · GCF_014287615
AssemblyASM1428761v1 · Contigreference genome · haploid
Genome composition6 189 697 bp · 46,5% GCBlautia celeris
Signal transduction countsGenes 263 · HK 136 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key